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GT18813

CSHL Arabidopsis genetrap mutant lines

Original: GT18813

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18813

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27069369 [Map]; Strand: c
      • AT1G71920.2 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
        Distance: 203; Region: intergenic
      • AT1G71930.1 - [+] show detail - vascular related NAC-domain protein 7
        Distance: -6771; Region: intergenic
    2. Chromosome: 5; Position: 3252843 [Map]; Strand: w
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -778; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -279; Region: promoter
    Flanking Genome Sequence: GT18813 - 3-prime edge 
    AATCCATAAC GTAGGTTTAT CTTGGTTCAA TTTTCAACTT TAATTTCTTA 
    TACATAAACC GACAACAATT TTTTTAGTAA AAGTTTTTTT TTTTCTTTCA 
    AAGGGAGAAA CAAAACTTCT CAAATCTATT ACAAAATATT TTTATATCAT 
    TTTTAGACTT TGGCTCATGC ATAGGGCAGG TTAAGCACTT ACTGCTTTAT 
    TAATTAATTA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3253064 [Map]; Strand: w
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -999; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -58; Region: promoter
    Flanking Genome Sequence: GT18813 - 5-prime edge 
    CCTACTTTCT CTCTCTCGAC AATGGACTTA GGCTCCATTC CACCCGCCTA 
    GGTTGGATGG GCGTGCTTCG TTGGAAAGCA TGGATCCGCC TAGGCTGTCC 
    CGAGTGTGAG CGAGGTGTGA GTGTCGCCCA TGGGGACATC TCGGTATTTC 
    GTGCGCAAGA CGACTATACT GCCACCCAAA CGGCCTAGGA GAATCCATGT 
    CAGCCCATGC CATGACACGC CCATTCTCTT CGGCGACGAG GTGAAAAGAT 
    GCCCGTGGGG ACATCTCGGT AATATCATGC GAACAAGTTA TATACCGCCA 
    CCCCTAGGCC TTGAAGAACA CCGAAAAGGA TGGTAGTACT ATTTAATGTT 
    GGAACGTCAA ATGAGATTAA AATAAACATA AATAATTACT AGTGGTATTA 
    ATTGCACTTG CAATTGTTAT AAAATAAGAA AAAATAGGGA AAAAAAATAC 
    AAATATGAAA AACAGAAATT TAAGCGTACG ATGTTAGAAG ACATAATTGT 
    AATAGAATTA GATCGGAACA AATTCAGATC GAATGAATAA TAGATTAGAT 
    CGAAGATAAG TTTAAATCGA ATGAGTAATT AAATAAGATA GGAACAAGTT 
    CAAATTAAAT GAATAATATA ATTAGATCAA GATAAGTTTG AATCGAATGT 
    TTAGTAGAAT TAGATTTATT TTTCTTTTTC CTTTTGAAAA TTTTACTTTT 
    ATCATACTGA TTTGATGAAA TCCGTTTAAA ATTTTAAGAT TTCTCAAATT 
    CATAAAATCA AAAAAAAA

AT1G71920.2

Model type
Protein coding
Short Description
HISTIDINE BIOSYNTHESIS 6B
Curator Summary
Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description
HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71930.1

Model type
Protein coding
Short Description
vascular related NAC-domain protein 7
Curator Summary
Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
Computational Description
vascular related NAC-domain protein 7 (VND7); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: vascular related NAC-domain protein 1 (TAIR:AT2G18060.1); Has 3020 Blast hits to 3015 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3006; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10336.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR