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GT18786

CSHL Arabidopsis genetrap mutant lines

Original: GT18786

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18786

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 371421 [Map]; Strand: w
      • AT2G01830.1 - [+] show detail - CHASE domain containing histidine kinase protein
        Distance: -3741; Region: intergenic
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: 1704; Region: intergenic
    Flanking Genome Sequence: GT18786 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTTATT 
    AAATCGCGAT AGTTTATATA AACTTTTGAA GAAAAGGACG ATTACACTAG 
    TCTGCTTTTT TGACTCAAAA TAGTGAACAC TTTGTATGAA GAATCGTTAA 
    AAGTTATAAA CATGCAGTAT AAGAACTAAC GAAAATATAA CCAAATTAAT 
    TTATGAAATA CAGTGGATTG GTTTTGGTGT TATTTTAAAT AAATGAATTG 
    GTTGAATGGG AGTGATTGTC GAGCATGTGA CAAAAAAACA TAATTTGAGA 
    GTAAATACAA ACACCGAAAA ATAGAATATG TTACAAAATC TTATAAAATC 
    TTAATAAATA AGGAGAATTT GTAAATTGTA ACCACTAAAT GATTTAATGA 
    TATAAAGTCA AACATGAATC TCACATGGCC GACACACACA CATTTTGTTA 
    GCACCACTTC CTTTGTGTAC CCCCTTTTCC CCCTATCTTT GTGTACTACT 
    AAATCCATAT ATTCTACTTT TTTACATCTT TGTGAATAAA GGATAAAAAT 
    TAGCAAACTT GTCGAAAAAA TAGAGTGTGT CCTACATGAA CATGAAATGG 
    ATGCTTTATA TGAATCTCAC GTCGGAAAAC TATAATTGAT AGAAACTGAG 
    TAGCAATATT

AT2G01830.1

Model type
Protein coding
Short Description
CHASE domain containing histidine kinase protein
Curator Summary
Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane
Computational Description
WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokine binding, cytokinin receptor activity, protein histidine kinase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 136787 Blast hits to 109703 proteins in 3011 species: Archae - 761; Bacteria - 121785; Metazoa - 32; Fungi - 2267; Plants - 2388; Viruses - 27; Other Eukaryotes - 9527 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR