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GT18277

CSHL Arabidopsis genetrap mutant lines

Original: GT18277

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18277

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10377126 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 3; Position: 22769075 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18277 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACATCAGA 
    ACCTGAGAGA CGCTCCATTA GAATCTCCAT TGTGATCTGA TTTGGTTCAC
    AAGACTGTTC GACCATCTCA TCCATCAGTT TAAGTAATGT CTCTCCTTGG
    GTTTTCTCGT TAAGACACTT AAACAAGGCA TTGTAAGTTT CAACATTAGG
    TCTCACCATC TTCATCTTCA TTTCCTCCTA CAAAGAGAGC GCTTGCCCGA
    AATTCCCCAG CTTAGAAAAT GCGTTTATGA GAATGTTGTA TATTACAGTG
    TTCGGATTGA CCTTTGAGTG CAAACCCATG TCCTTAAAGA GCTTCAATGC
    TTCGTCTAAT TCGCCGACTG AGCAATAAGC GTCAATCACC GCTCCATATG
    TCGTGACAGT CGGGTCTAAC CCGTCTTCTC TCATCTGCTC CATCATTCTC
    TCAACACTCT CGAAGTCCTT GTGTTTACCG AAAAACGAAA TCAGAGTGTT
    GTAAGTGATG GAATCAGGTT TCTTCCCTTC TTTTTCCATA TCGGT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22769017 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18277 - 5-prime edge
    CCTACTTTCT CCCTGTTCTG ATGAGTTAGT TAAGCTGAGG AAGTTTATGC 
    AAGGCTACTC TGTTGCTTCG CTGACCGAGA AAGCTTCACC TTTCGATGTC
    TTTAGCTTGG GATAATGTTC GTTTAGATAC AGTAACCATT ACTATAATGT
    TTTTAATAAT TTCTTGATTA TGCATTTTAT ATAATTACAC AATCGCTATT
    TATTTATGTA TGGTTATTTG CTAAATTTTG TTAAAATAAA AAATCCAGCT
    TTCTACAATT CTCAATGCAG TAACTTAAGT AAGCCCATTT ACTTATGGGC
    CTCGTGTATT TGAGGTCCCC GAGACTTGGA CAGACACGTG TCTCGAATTG
    AAT

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR