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GT17873

CSHL Arabidopsis genetrap mutant lines

Original: GT17873

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17873

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1971864 [Map]; Strand: c
      • AT3G06437.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17873 - 3-prime edge 
    AACGGTAGAG GTATTTTACC CACCGGGACC GACCGGGTAT ATCCCTATTG 
    TTGAACATGC ACGAATCACA CAAGTACGAA AATGGGACCT CTAGGGAAGG 
    AAGAAGAATC TTTCTATTAA AGACGAGCCT GCGACTTAGG CGAATTGGAC 
    GGATTACAAA GGATGATTTC TTCAACGAGC ATAGATGGAG TAAGAACGAG 
    CTGATTGTAG ATGAAAGGCG AGCTTGAGGC CGGAAGACGA ACTTGATGTC 
    CGACGAAGAA TAGAGTTTAT TCGTTTTATA GCTGAACCTT GTAAAAGGTT 
    GCCTACGTAC CCTTAGAAAG GGATCAAGCC ACACGTAGTT CATATTAGAA 
    TAAGTGAGCT AGGCCGTCAT TGGAGGTAGG TCGGCAGGTA GTTGACGAGC 
    CGGCAAATGT GCGACGAGCT GGATGAACCG TGGAAGAAGG ACGAGTTGGA 
    CAAACCGAGT TGTTTGCTGA AGGTGTAGAC GAGCTGGGCG ACGAGATAGG 
    TGGACTATGC AGTCAATGGA CGAACTGCCG CTAGGCGAGG AGGTAGATGA 
    GTTTTGCAGT CGAGGGATGA GCTGATAGCT AGACGAGTTG GACGATCTGA 
    CTAGCTGACA GCTAGGCGAG GAGATGGTCG CTGAGTGATG GGAAGAGCTT 
    GAAGACTAGC TGAGGAGCTT GATGACGAGC TGAGGAGCTT GAGGACAAGC 
    CGAGGAGCTT GAAGAGCTTA AAGGCGAGCT GAAGAGTTTT GGCGATGAGG 
    AGCGAGCTAA CG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22768076 [Map]; Strand: w
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -2346; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 841; Region: intergenic
    Flanking Genome Sequence: GT17873 - 5-prime edge 
    CTTTCTCCCT GAACACAGTG ACTGTGATAT TAATTACACC AACTTCCTTT 
    TATCTTGTTT TAGTCTTTAA AAATATTGAT CCTTATTCCT TCGTAAATGC 
    ATGTGATGCT TTTGGCATTA AATCGTGACT AACAATATGA CCAATGATCG 
    GAACCAATGA TCGGAACCAA AGCTAGAGGT TCAGCTTCCA AAGTTGTCAG 
    TTTAAGTAAA TGCATGTGAT GTTTTTCTTT GTCAAATTGG TTGTAAGTTG 
    TAGATTGTAA CATAAAATCA ATTCTTATTT GACGCATGAT ACAAAACCTA 
    AATGGCGCTT GAAAATTCTG ACGGTTAACT GTAACAAAAG CTCAAGAGGT 
    GAAAGAGAAT CTGTATTCTT AATTTCCATA TCCATATTGT ATAAGATTCG 
    AGAAGAATAT TTTAGTTCTA CGTAGAAAAT ATACAAATGT TCCTCAAAAC 
    ATAATAAAAT GTGCGCACGT AATAAGTCGG AACAATAGGG CGAAAAAGGT 
    GTACATTTGA TAAATCGTGA TTTATACACT AATGAAATTT AAGTGCGAAG 
    ATCTAACGGT CCTGACCCCT AGGGTTAGGG GAGTTATAAT GATTAGTCAA 
    CAATTAAAAC AAAACTAATC AACTCGTTGA ACAAATGGCA GCTTTGACTT 
    CCGCTTCTTT AGTTGTCTGA AAAAAAGAAA GCCGAGTCAA ATTCTCTGTT 
    TAGGATTCGC TACTAGTCAG CTCGAAGAAC CATTCAATTC GAGACACGTG 
    TCTGTCCAAG TCTCGGGGAC CTCAAATACA CGAGGCCCAT AAGTAAATGG 
    GCTTACTTAG TTACTGCATT GAGAATTGTA GAAAGCTGGA TTTTTTATTT 
    TAACAAAATT TAG

AT3G06437.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR