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GT17839

CSHL Arabidopsis genetrap mutant lines

Original: GT17839

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17839

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23359126 [Map]; Strand: c
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G63220.2 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G63230.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -507; Region: promoter
      • AT3G63230.2 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -507; Region: promoter
    Flanking Genome Sequence: GT17839 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCGGGA 
    GAAACAAGTT AGCTTGTGAT TTTGCCGGAC GACGACAATT GAATCAAATC 
    AAATCAAATC AAATCGAGGT TAAGGAACAA CAAGAGCAAG GAGAGAACAA 
    GGTTTTAATA AAGAAGCTAC GTCGTCGTTT TTACGTTTAT GATATTACTA 
    AACCGATTTT ATAATCATCA TTTATGATTC TCCCCCGTAC CGGCCTTTTT 
    ATGTTTTTCT TTGGGTTGCT GCTTTCCACA CAAAATATCA AAACGT

AT3G63220.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G16250.1); Has 6493 Blast hits to 4467 proteins in 250 species: Archae - 4; Bacteria - 460; Metazoa - 4606; Fungi - 8; Plants - 1152; Viruses - 24; Other Eukaryotes - 239 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63220.2

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G16250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63230.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63230.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Computational Description
Protein of unknown function (DUF581); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650).
Link
InterPro Scan - TAIR