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GT17742

CSHL Arabidopsis genetrap mutant lines

Original: GT17742

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17742

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14006 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -647; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -621; Region: promoter
    Flanking Genome Sequence: GT17742 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT ATCGATATCG 
    CTTCCCCGCA GAGAGTCAAT TTCAGGTTCC AAAAACCACT TCTTCTTCGT 
    ACGCTCTGAT ATCGAAATGT GTAGCATCAT AGCTTAGTTG ATAGCGTTTT 
    TGATATTCAG ATTCAATAGT GCGGTATTGA GAGGGAAGAA CTGGGAGCTC 
    CCACTGCCAC CATTTGGGAA GGGCTGGTGA GTGACTTCTC TCTGTTTCCT 
    CTTCGGAGCT ACTTGTATAG ATAAAGAGAG TGAGTTTGGG TTTTGGTTCC 
    ACAGGTTTGA GAATGTGTAT ATGGACGGTG AGATCAGAGT GGCCAAGGAC 
    ATCAGAGGAG ACTACTTAAT TGTTGATCGT GCTTCATCTC ACTCGACGAG 
    GAAGTAGGGC TTGAACTTGC CAGGCGTCGA AGGAATATCA TCAAGATGCG 
    ACATTTGCTT CATATTTACC TCTACAGAGA GAATCTTCTT CTTCTTCTTC 
    TTTGAGGGTT CTTTTTTTTC TTGGATTGGT TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13927 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -568; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -700; Region: promoter
    Flanking Genome Sequence: GT17742 - 5-prime edge 
    TCGATATCGG AGCGTACGAA GAAAACCCCG TCCGGCGGGA AAGTGATGAC 
    GTTATTGAGG ATCCGTTTAT TCACATCGAT CACCTGCAAA ACGTCTCCGG 
    CGGTCGTCCC AAACAAGCCT GCCTTTTCTA TGATGAACAA CTGTTCCTTC 
    TCCGTCGTCC ACAAGAGCCG CCACGTAGCA GATAGAGAGT CGTCTGTGGT 
    GATGGAGCTG CGCCCGATAA CCGTCATGGA TTCGATGGCG TTCACGATTT 
    CATCTCGCTT CTTGGGGTCT TTCTGGGTTC TCAGACCTCG ATCCTCCTCG 
    GAGATCAGCT CAAGCAGCTT CCTCTTGGCT CGCTGTGCTG GATTCGCGAA 
    GATCGAGCAG CTTGTTCGAA AACCGGCACG ACGAGTGCGG CGGAGTGGAG 
    GAGAACATGC CGACAGCGAG AGCGCGAGCG CCATGTTTGC AAATTGCAAT 
    TTCCATGGTT AGGTTGTTGC ACGAAGAAGA AGAAGAGATA CTCTGTTATT 
    TGGGTTTCTT TTCTAAAAAG CCCATTTGGG TTTTATTTGC TTTATCTCAT 
    GAGA

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00040.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Computational Description
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR