1. Home
  2. Mutant Lines
  3. GT17649

GT17649

CSHL Arabidopsis genetrap mutant lines

Original: GT17649

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17649

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71656 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17649 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTTTAA 
    GAACCTGTAA CATTGCAGGA ATCACCGGGC AAGACAACAC CAGTGTTAGG 
    ACGGACACAG TATTTGCGAG GATTGGTTGT TTTAACCTGT GTGTCTCTCA 
    ATTAACATCA ACACTCTCTC AATGTGTACT AATAAGACAG AATTGTAAGA 
    AGAGAATGTA AAAGACCTTA AAAGCGACAC ATTGAGTAGT TGTCTTGTTG 
    GTCAATTGCA TCGAACACGA ACTTTGTTTC TTCACTTCAA CTTCTCACCA 
    CCAACAACAA CACAAATTAT AACAGAGGTT ACCCGACCGG ATCGTATCGG 
    TATATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71600 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17649 - 5-prime edge 
    TCATCTACTT TCTCCCTGCT TAAACCATTT CTTCTTTCAT TCAAAAGCTT 
    TGGTTTTTTT TAGTCAACAA CACAAAAGAT GATTGTTGTT TTGTTTCAGT 
    GACGATGCAA GCCCAGAAAG AGGCACCACT TGATATGCAA TGCAAAGACA 
    AGTTCCTTGT TCAGACTGTT GTTGTCTCTG ATGGTACTAC TTCCAAAGAA 
    GTCCTCGCTG AAATGGTTTG CACTCTATAT GCTTTTTTAA AGGAACTCTC 
    TTGCTTTAGC TTCTTCTTCT TCTTATTATG AAATGGTTTC TTTGTTGCAG 
    TTCAACAAGG AGGCTGGTAG AGTGATTGAG GATTTCAAAC TGCGAGTTGT 
    TTACATTCCT GCTAATCCTC CTTCACCTGT CCCTGAAGGT TCTGAAGAAG 
    GCAACTCTCC TATGGCTTCC CTCAACGATA TTGCCTCTCA ATCTGCCTCA 
    CTCTTTGATG ACGTGAGATG ATGATTCATT TTGTTATCCA A

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR