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GT17543

CSHL Arabidopsis genetrap mutant lines

Original: GT17543

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17543

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551613 [Map]; Strand: c
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT17543 - 3-prime edge 
    GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA GCTTTGAGGC 
    ATTTGCTCAA CGTCGGACGA CATATGATTA TTACAACATC AGGTAATTAG 
    AAAATCATGA TTATTCATTT TGTCTTATAT CTTATAATAG TCACTAATAA 
    ATATCTGATT TTTACAAAAT ATTTTTATGG TGAAAGAAAC ATCTGATGGT 
    AGCAATGAGG GCCTACAACC AACTTCTTCA AGAATCTGGT GGAGCTAGTT 
    GTGTCATGTT TCATGACACT CCTATTTTTA TAAATCTTTC GCGTATTACC 
    TATGTCGCAA ATAAAAGATT TTGGTTAACC GCTAAAAGTT GAAAAGAATT 
    GATCACCAAA AGCTTGTAAT TCGAATATTC GGTTATGATC TGTATCTTTG 
    CTAACTCACT TGTTACCTAA TTGTAGTTCG AATTCGAGTT CTATGTGCTC 
    TTGTTGTCAC CTGTTGTCTG TGCAATAATG GGATCCCAAC ATCCCCGAGG 
    ATGGCCTTGT CGTTATCAAT GGGCCAGATG ACAGTAAAGC GAGGTTCAGT 
    ACAAAGTGAT CATTTCCGAA TCGATTCGTA TTTCGAACGT ATCTGACACG 
    TGTCAAAT

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR