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GT17324

CSHL Arabidopsis genetrap mutant lines

Original: GT17324

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17324

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85586 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: -357; Region: promoter
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: intron1 (CDS)
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17324 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCACT TGTCGCTTAA 
    TTTCTCGAAA CGAATTTGCT TTTAACCTAA TAGTACAAAC AAATTTGTCA
    ACACACAGTA AATTGAAGTT CATTGTATCA ACCTCTATCA CGGAGGGATG
    CAACAACTCG ATGTTGCTTC TCGGCCCTCG CGGCTCTGGC AAAGCTGCTG
    TATGTCGAAC CCTGCTTCCT TCTACTCTCT ATCTCCGTCA TTGGCGTTTG
    ATTTCTTCTT TTATTTCAAA AAATGGGTTG ATTTCAGGTC TTGGATCTCG
    TTGTAGGTGA TTTATTGGAG CAGTTTCCTG ATTCAGTATC AGTAGTATGT
    CTGATTTCTT ATACATTTGG AACTATCTCC TATATCTAAT CTCATCGTTA
    TGATCTTACT ACCATCTCAA TGTGATTGCA GATCAGATTG AATGGACTCT
    TGCATAGTGA TGATAATTGT GCCTTTAAGG TCTAAGAGAG GGAGAGAGCC
    CACCATTCTC ATTTCCTACA CCTAATCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85520 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: -291; Region: promoter
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17324 - 5-prime edge
    TCCTACTTTC TCCCTGCAAG TGAGTGAAGC ATCAGACCTG TAATTGCTAT 
    CTGACGAAGC GGAAAGAGGT CTGAAGACAT AACTAGGATC ACAGAGTCTC
    CCGCGAATCA GATTTAGGGA TTTCTCCGCC GGAGTCTCTT TGCCCATCGG
    ACTGGCGGGA AAACTGACAA GCCAAGCGAG CCCTCTGTGT GAACTGTGAA
    GTGAACACCC ATCATCACTA CTAGTATAAA CTTACTCTAT GGGCCGTAGT
    AATGGGCCTT ATAAAGCAAT AAAAGGCCCA ATAAAGCTCC TTTGCTTTCT
    CCTAATAACG ACGTCGTTTA CATTGTGTTA GCAAGTTTGT GATGGAAGAA
    GGTTTAACGG AGAAAAAAAA AAGGATTGGG TTGTTTTGAA AAATATCAAA
    TGGGGGCAAC AAAACTCGAC CGGAACCAAT CGTTCCTTCT CTGAAGCTCT
    CTTTGCAATT GAAAATCACC ACCTTCCGAT CCGAGAGAGG ATTCTTCGAA
    AGATGAGCAG CCCAAGCCCT AGTTCTGCTC TTATCCACCA TTTCCCCCTC
    ACCACTCGCA ACTGGGGTTC CCCTACAAAG CAGCGTTGCC CTTCCGCTGA
    AACTTTCTGC AATTCGGGGA GGGAAGCTGG ACTCCAATAC TCCGTCCCGC
    AACGCCGGAG CAAAGGCTTT GGGCCGGGGT

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR