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GT17292

CSHL Arabidopsis genetrap mutant lines

Original: GT17292

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17292

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3116114 [Map]; Strand: c
      • AT3G10110.1 - [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 fam...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17292 - 3-prime edge 
    ATTTTACCCA CCGTTACCGA CCGTTTTCAT CCCTAATAAA CCCTGATTAA 
    TTTTATCTCA TAGGACGCAC GAACAAACAC ACTTGATCTG ATTCGCACAA 
    TCCCCTTCTT TTAAGCTTTT GATGACATTG TCCCTTGACA GAACCTACTC 
    TCTTAACCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3116173 [Map]; Strand: c
      • AT3G10110.1 - [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 fam...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17292 - 3-prime edge 
    TAAGGCGCGC GAACGAAACA CGCTTGATCT GATTCGTACA ATCCCCTTCT 
    TTTAAGCTTT TGATGACATT GTCCCTTGTC GGATCCTACT CTCTTAACCT 
    TTGAAATGGC TGATTCGAGT GTTGCTGAAA CAACAACCGG TGCTTCTCTT 
    CCCTCCACGA CTTCTGATGA GAACTCTACC CAGATTCAAC CGATCCGGAT 
    GCCAACCATC GAGGAGATCC GAGCTCAAGA GGTTTGGAAC AACTGCGCCG 
    TTCGCGCTGT TACTAGTGGA GTCATGGGTC AGTTCAAATA TCCTCTCTTT 
    CTCGACCTAT ATTGCTCCAT TGCTCTGATT TTCCAAAAAT GCGAAAAGCT 
    CTAGGTACTT TGATTGGTTT GAGAATAGTG AAATTGGTAA AGTCTTTAGC 
    TTTCTAATAG TGATATGCTT CTGAGCTGGT TATTGAGTCA CTTTCAGATT 
    GCACTTAATA GTCGGATTTG GTTAGGTGAA TTGATGATGT GAAATCTCAA 
    ATCGAATCTA TTTTCTATAA ATACTCTAAA AGGTGTAAAG CTACTAATAT 
    AAATGCTCGC CGGTTGTAGA GTTGATATGA CAGTTAGACA TGTGAAGGAT 
    ATTCAATTGA TTTGGTCACA TTCTCTGTGA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3113941 [Map]; Strand: w
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon3 (NonCoding)
    Flanking Genome Sequence: GT17292 - 5-prime edge 
    CGATCTTCAA GTCGCGTTGG TTGCCGTGAA AGAGCATGGG GAGAGGGAGT 
    GCAACAGGCT GCGGAATGAC CGAGCTTCTA AAGTTTCCCG TACCACAACA 
    GAAAGCCCAA GCTCGTCTTG ATAGAGTGAA GGCTTATCTC AAGGAGCAAG 
    AGGACCTCGT CGGGCCGAAG GTGGACGCTG AGAATCAAGC TAAAGGAGCT 
    GAGGAGATAG TGGGTATTCT GATGCAGAGA GGCGCGAAGA TTGCGGCATC 
    CGAGCTCAGC GGCCTTAAGG AGTTAACCAG AAGGGCGGCC GACGAGGTCA 
    ATGCTTTGAA CGTCATCGAG CTCGGGGATG ATGACCTGAA CATGTCCCCG 
    GATCAGCTCG GTTTTTCGAG GCAAACCTCT CAAGTTGCTC CGGTGGCGGA 
    CCAGCACGGC TCAAATGTCG ACCTTGTTAG CGGAAGTGAT ATTCGACGCG 
    TAAGCGTTGA AGAGGCGAAC CAGACGATCT GAATAGGTCG TCTTTTTAAT 
    TTATTTTGAC ATCGATCGTG GACCCAATTT TCGGGGCGAT CTCAAAACTC 
    TTATTTAACC GTGGACCCAC TTTCGGGGCG GTTTTTTAAT TTTAACTTCT 
    ATTTTCGATG GTTTTCCATC TTGCCTGTTT CGGAGGCAGA ATAGTATTTT 
    TTCCATGTAT GAGCTTTGTC ATTTTTTGGA AAAGGAAATT GAGGGAAGTC 
    AACCCGTAAT CATGGAAATT CCCATTTTCC CAGTTTTGGA GAAATGCAAA 
    TATTAGTGTT TCTCGGGAAA GGAAATGAGA ATTTCCAGAT CGCAATTGAG 
    AAAATTTCCA ATTCGATTCC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3114089 [Map]; Strand: w
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon3 (NonCoding)
    Flanking Genome Sequence: GT17292 - 5-prime edge 
    GAGGACCTCA TCGGGCCGAA TGTGGACTCT GAGAATCAAG CTAAAGGAGC 
    TGAGGAGATA GTGGGTATTC TGATG

AT3G10100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT3G10110.1

Model type
Protein coding
Short Description
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Computational Description
maternal effect embryo arrest 67 (MEE67); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrial inner membrane, chloroplast, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT1G18320.1); Has 680 Blast hits to 680 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 229; Plants - 130; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR