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GT17288

CSHL Arabidopsis genetrap mutant lines

Original: GT17288

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17288

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29000019 [Map]; Strand: c
      • AT1G77170.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -482; Region: promoter
      • AT1G77180.1 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon2 (CDS)
      • AT1G77180.2 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon2 (CDS)
      • AT1G77180.3 - [+] show detail - chromatin protein family
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT17288 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTGCTTACTA 
    CCCACCCTCT CTGAAGCCCC TGTGAAAGCT TTGTCAGGCT TAAACCTCTC 
    AGTATTCTTG ATCTTATCGA GCTGCTCATC AGCGTTTCCA TACATTTCTT 
    CATCGTAATC CTTCTTTGGC TTGTACAAAG TCGAAAGAGT TGGTTGTGCA 
    GTGAACAAGC CTTTGTCGTA TAAGTTGTAT TGGTCATCAG CAGCGAAACC 
    AGAGTCCATT CCTTTGTCTT GGTTAAACAG ACGTTGATCA TACATAACTT 
    CACCACCACC TTTTCCTCCA GTAGATGCCA TTCCAAGAGC AACTTTCTCA 
    CTGATGTCAC GGTCTCTGTC TCTGGTGATC TTGCTCTTCT TCCCCATGGC 
    AGCATCTTTG GCATCCAACC TTCTCTCCCT CTCTCTTTCC CTGCGACGCT 
    CTTCTCGTAT CATTTCTCTC TGAATCCTTT TTTCCCTCTC CTCCCTCTCT 
    NCTTGAGGCT ATTCCCTTTC TCTTTCCCTT CCTCTATCCT GGTCATAGTT 
    GTTATAATCA CCTCTTGGGT CAACACTTTC ACTCCTACCC CTGTCAGATG 
    AGACAGGCAT ACTCATAGCA G

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28999959 [Map]; Strand: c
      • AT1G77170.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -422; Region: promoter
      • AT1G77180.1 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon2 (CDS)
      • AT1G77180.2 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon2 (CDS)
      • AT1G77180.3 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17288 - 5-prime edge 
    TACTTTCTCC CTAGTAGTAA GAGAGACCGA CCTGTTGAGT TTGAGAAGGA 
    AGAGGAACAA GATCCTTTCG GTCTTGAGAA GTGGGTTTCT GATTTAAAGA 
    AGGGTAAGAA ACCTTTGGAC AAGATCGGAT CTGGTGGAAC TATGAGAGCA 
    AGTGGCGGTG GTGGTAGCTC TTCAAGGGAC GATGACCACG GCGGTTCTGG 
    TCGAACCAAG ATCAATTTCG AACGCAGTGA CCGGCGTTAA AAGTCAAGAC 
    AAAGAAAAAG CTCAGTAACT GATCTTTGAT TTCAATATAT AACTTGTTAT 
    TTTGGATCTG TTAAAACAGT TTGCTTTGGA TTATCAGTAT TTATGTTGTT 
    GTGAGTCTCT TAAACTACTC GAATACAATC TTTCAGCTTC ATAATATCAG 
    ATCTTTTGAG CTTATTTTAG TTTCTTTTTC ACTGTTACAA CTTTGTGTAC 
    TTAAGAATCT TAGTTTTGAA TCAGGACA

AT1G77170.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 36578 Blast hits to 13720 proteins in 224 species: Archae - 0; Bacteria - 18; Metazoa - 87; Fungi - 88; Plants - 35844; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77180.1

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 9534 Blast hits to 6488 proteins in 453 species: Archae - 14; Bacteria - 426; Metazoa - 4688; Fungi - 1154; Plants - 570; Viruses - 47; Other Eukaryotes - 2635 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77180.2

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77180.3

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015).
Link
InterPro Scan - TAIR