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GT17256

CSHL Arabidopsis genetrap mutant lines

Original: GT17256

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17256

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27021236 [Map]; Strand: w
      • AT1G71830.1 - [+] show detail - somatic embryogenesis receptor-like kinase 1
        Distance: 0; Region: exon10 (CDS)
      • AT1G71840.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -982; Region: promoter
    Flanking Genome Sequence: GT17256 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTC 
    CGGGTTGGCC CAACCCGAAA TCTCCAACAA CCGCTTCGAA TTCTTCGTCT
    AAGAGGATGT TTGCTGCTTT TACGTCACGG TGAATGATCT TCGGATCGCA
    GTGATCATGT AGGTAAGACA AACCTCGAGC TGAGCCTAGC GCGATTCTCT
    TCCGCGTTGG CCAATCAAGC GGAGGTTGTG ACGGTGGCCT CTCTGTGTCA
    TTAGTGTAAC CAACAATTAT GAACCCATAA AGGAAAACAT GAAAAAACAC
    TTCACGTCAA AGTAATTGAG AGAGAGCACA AGATGTTTAA TTGTTTAGTT
    TTTACCTCTG AGACACGAAG CAACACTTCC ATTGGCCATG TAAGGATACA
    CAAGCAATCT CTCGGTCGGT GTCATACAGA AACCTCGTAA TCTCAACAGG
    TTTCGATGAA CTGCCATACT TATCATCTCT ACTTCTGTTT GAAACTGGAG
    CTCTCCACCT GGAGTTCGCT CTTCCTTCAG TCTCTTGACA GCAACAAGAG
    TTCCGTCTGC CAAGCGTCCC TTGTAGACTT TCCCAAACCC ACCTCTGCCC
    AA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27021279 [Map]; Strand: w
      • AT1G71830.1 - [+] show detail - somatic embryogenesis receptor-like kinase 1
        Distance: 0; Region: exon10 (CDS)
      • AT1G71840.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -939; Region: promoter
    Flanking Genome Sequence: GT17256 - 5-prime edge
    CCTACTTTCT CCACCCGGTT GGCAAAGCTA ATGGACTATA AAGACACTCA 
    CGTGACAACA GCAGTCCGTG GCACCATCGG TCACATCGCT CCAGAATATC
    TCTCAACCGG AAAATCTTCA GAGAAAACCG ACGTTTTCGG ATACGGAATC
    ATGCTTCTAG AACTAATCAC AGGACAAAGA GCTTTCGATC TCGCTCGGCT
    AGCTAACGAC GACGACGTCA TGTTACTTGA CTGGGTAATA ACAACATAAA
    ACTTCCATTT GACCCAACAA AAACCATTGA AACGAGAATC TAATCTCAAA
    TACTTGTTTG TTGGTTTAGG TGAAAGGATT GTTGAAGGAG AAGAAGCTAG
    AGATGTTAGT GGATCCAGAT CTTCAAACAA ACTACGAGGA GAGAGAACTG
    GAACAAGTGA TACAAGTGGC GTTGCTATGC ACGCAAGGAT CACCAATGGA
    AAGACCAAAG ATGTCTGAAG TTGTAAGGAT GCTGGAAGGA GATGGGCTTG
    CGGAGAAATG GGACGAATGG CAAAAAGTTG AGATTTTGAG GGAAGAGATT
    GATTTGAGTC CTAATCCCTA CTCTGATTGG GATCTTGATT CTACTTACAA
    TTTG

AT1G71830.1

Model type
Protein coding
Short Description
somatic embryogenesis receptor-like kinase 1
Curator Summary
Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later
Computational Description
somatic embryogenesis receptor-like kinase 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 2 (TAIR:AT1G34210.1); Has 181670 Blast hits to 121787 proteins in 4268 species: Archae - 123; Bacteria - 18224; Metazoa - 45784; Fungi - 8994; Plants - 88758; Viruses - 411; Other Eukaryotes - 19376 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71840.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 91198 Blast hits to 35247 proteins in 911 species: Archae - 70; Bacteria - 10066; Metazoa - 38021; Fungi - 19388; Plants - 11732; Viruses - 0; Other Eukaryotes - 11921 (source: NCBI BLink).
Link
InterPro Scan - TAIR