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GT17203

CSHL Arabidopsis genetrap mutant lines

Original: GT17203

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17203

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17203 - 3-prime edge 
    AGAGTATTTT ACCGACCGGT ACCGACCGGT TTCATCCCAC TGCACCACCA 
    ATAGCCAAAA AAAAAAAAAA CCGGGGAAAA ACCTGGGCAA AAAAAAAAAA 
    ACCCCCAAAA ATTTCCTTTT TTTGGGAAAA ACCTTTTAAA ACCTTCCCGT 
    TTTCTGGGGG AAATTTTTTT TTTTCCCCCG GCCCGGGGGC CCCCCCAGGG 
    GGGGCCCCAA ATTTTTTTCC AAAAAAGGGG TTTTCCCCCA TTTTGGACCC 
    AAAATGGGGG GGGGGTTTTC CCAGGGGTTC CCCCCCCCCC CCCCCCAAAA 
    AGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 62579 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -831; Region: promoter
    Flanking Genome Sequence: GT17203 - 5-prime edge 
    AAGTACACTG TTGCCCAGAA GAATCAAAGA GAAAACACAC TTGGTTTAAG 
    AGTAAGAGTA TAACAATAAC AGACAATTAA AGAAGAATCA TATGCATATA 
    GGAGACAAAT CATTATTCTC ATCATCGCAG ATAACATGGA CAGGTTTATC 
    GACAAAGTCG TTGTCTTGAA CGTAACAATC TCGATCATAA GTAGGCTTCT 
    CCACGAAATT GTTGACATGA ACGTGACAAT TCCTCGTGAA ATCATCCCCA 
    AATCCGGCTC TTTGTTTCAC ATTCTTCACA CGACTAAACA CCCAACTCGT 
    GTAATGAGGA GGTAAAA

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR