1. Home
  2. Mutant Lines
  3. GT17188

GT17188

CSHL Arabidopsis genetrap mutant lines

Original: GT17188

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17188

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26018032 [Map]; Strand: c
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17188 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGAGGAG 
    GTGCTCTCTG GTTTTTCCAA ACCGGAGAAA GAACCGGAAT TTGGGGAGAT 
    ATACGGATGC GGATACTCGG GCTCATCTCC TGAGTCGGAT ATAACGTTGT 
    TGGATTTCTC AAGCGACTGT GTGAAAGAAG ATGAGAGTTT CTTGATGGGT 
    TTGCACAAGT ATCCTTCTTT GGAGATTGAT TGGGACGCTA TAGAGAAACT 
    CTTCTGAATC CATTTTATCT TTTTGATTCA TGTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26017975 [Map]; Strand: c
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17188 - 5-prime edge 
    CCTACTTTCT CCCTGACCTC CTCTGTTTTG TTCTGTTTCT CGATCTGAGG 
    CAGTGGAAGA TCAGAACTAT TGCAGATGGA TTCGATCTTT GCGTTGATAG 
    ACGGAGACAA TATCTGTTTA TAGTGTCCTT GACGAACAAT GTCTGGGAAA 
    TTGAGACGAG CGTTGTCTCC TCTGATCTTA TGAGCTGCTT GATCGTAAGC 
    TAATGCAGCT TCTTGAGCCG TTTCGAACGT ACCGAGCCAT AACCGGGTTC 
    GGTTTTTAGG TAGCCGAATC TCAGCTACCC ATTTACCCCA TTGCCTCTGT 
    CTTACGCCTC GGTATAGTTT AACCGGTTTA GTTGCTACGT CGATTTTCTT 
    CATTGAGGTT GGTTTAGCGG TGAGAAGATG ACTACCAGCG CGACGACGAG 
    ATTGGTTTTG CCGGAGATGT AACTCTGTCT GAATTTGGAG GATTTGTGTT 
    GGAGTGAGCT GGTTTAGCCC AATCGGACCG GTTTGGTTAG ATACCGGTAA 
    GACTTGGTCA TTATTAGGGA TGAAATTAGG AGTTAATGGT TTTGGATTTG 
    ATGAATTCGA AGTAGAAGAA GATGAAGTTA CCTTCATGAA TGGTTCAAGA 
    GCTTCCATGA ACTCGTCTAC GTAAGCATTC ATGTTTAAAG CCATTGCCAT 
    TTGTATACAA TAACCAAAAT AAATAAATAA ACTAATAAAG ATTGGAGAAA 
    CAAAGAGAAG AAGCCCTAAT TAAGAAAACG AATTGACTAT ATTATGGAAG 
    AAAAAAAAGT AGAAACGAAG ATTTATATCT TATGTTAAGA TTTGAAATAG 
    TCACGATCTT GGGTTTGATA GTTT

AT5G65130.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR