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GT17180

CSHL Arabidopsis genetrap mutant lines

Original: GT17180

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17180

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17180 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGAGGAGG TGCTCTCAGG 
    GTTTTTCCAA ACCGGGAGAA AGAACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26017954 [Map]; Strand: c
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17180 - 5-prime edge 
    TCTGTTTTGT TCTGTTTCTC GATCTGAGGC AGTGGAAGAT CAGAACTATT 
    GCAGATGGAT TCGATCTTTG CGTTGATAGA CGGAGACAAT ATCTGTTTAT 
    AGTGTCCTTG ACGAACAATG TCTGGGAAAT TGAGACGAGC GTTGTCTCCT 
    CTGATCTTAT GAGCTGCTTG ATCGTAAGCT AATGCAGCTT CTTGAGCCGT 
    TTCGAACGTA CCGAGCCATA ACCGGGTTCG GTTTTTAGGT AGCCGAATCT 
    CAGCTACCCA TTTACCCCAT TGCCTCTGTC TTACGCCTCG GTATAGTTTA 
    ACCGGTTTAG TTGCTACGTC GATTTTCTTC ATTGAGGTTG GTTTAGCGGT 
    GAGAAGATGA CTACCAGCGC GACGACGAGA TTGGTTTTGC CGGAGATGTA 
    ACTCTGTCTG AATTTGGAGG ATTTGTGTTG GAGTGAGCTG GTTTAGCCCA 
    ATCGGACCGG TTTGGTTAGA TACCGGTAAG ACTTGGTCAT TATTAGGGAT 
    GAAATTAGGA GTTAATGGTT TTGGATTTGA TGAATTCGAA GTAGAAGAAG 
    ATGAAGTTAC CTTCATGAAT GGTTCAAGAG CTTCCATGAA CTCGTCTACG 
    TAAGCATTCA TGTTTAAAGC CATTGCCATT TGTATACAAT AACCAAAATA 
    AATAAATAAA CTAATAAAGA TTGGAGAAAC AAAGAGAAGA AGCCCTAATT 
    TAAGAAACGA ATTGAC

AT5G65130.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR