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GT17170

CSHL Arabidopsis genetrap mutant lines

Original: GT17170

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17170

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 874556 [Map]; Strand: w
      • AT2G02990.1 - [+] show detail - ribonuclease 1
        Distance: 0; Region: exon4 (CDS)
      • AT2G03000.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -677; Region: promoter
    Flanking Genome Sequence: GT17170 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGTACAAT 
    TGGCTATTAC CAGAACCATC TCTGTTACAC TCAACCCAAG GAGTGAAACC 
    AATTGACTCT TTTATCGAAT CTCTTATGCT CTCCAAAGAG TAAGATTTCC 
    CATCCGGATT AATCCCTATT ACATAATAAA CCAATAGTTA GACCAATGAG 
    ATCCAAACCG GGAAAAGTAA AAGGTAATTT GAAATTAAAA CGTACCGGCT 
    TTGGTTAGAG CACCAAGGAG ATTAGTTTTC TGTTTAAGGT TTAGAGCGGT 
    TTGGAAATAC TCATGTTGAT CGATACCCGA CTGGAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 60179 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: -893; Region: promoter
    Flanking Genome Sequence: GT17170 - 5-prime edge 
    CTTCTATCAC TGAGAGGTGA CTTCCATTGT CTGCTCAATA GAGGACTACC 
    ACACGTTCTT TCTCAATCTC TCGTGCGTTT AACTTGTCAC AGAAGAAACA 
    TCATTCACAG ATCTTCAATC ATTTTTTTCT TAAAAAGAAA AGATGTAACA 
    AAGAAAGTAT ATGAACAGTA TCTTAGCCGT TCAATAATCA TTTTCAAAAT 
    TCTCATCTAT TTTTAAACCA GTCCGGTTCA GATAATGTTT CGCGTGAAAT 
    GACTCAGATG ATAAGTTTAT AACATTAGGA TAACGATTAA GCTCTGTTAC 
    TTAATTCCCC AATTTGCATA ATATTTTGGA ACGAGAAACA ACTCATCAAA 
    GCAATGTTTA CAAGAACTTC TCGTGCTATT TGTAGAACGT AAAATTCATA 
    AACGCGAACA ACAAAACAAA ATAACATTTA GTATTTTTGT TTACCATCAT 
    GTTCAT

AT2G02990.1

Model type
Protein coding
Short Description
ribonuclease 1
Curator Summary
member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.
Computational Description
ribonuclease 1 (RNS1); FUNCTIONS IN: ribonuclease activity, endoribonuclease activity; INVOLVED IN: cellular response to phosphate starvation, aging, response to wounding, anthocyanin biosynthetic process; LOCATED IN: extracellular region, cell wall, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2632 Blast hits to 2631 proteins in 514 species: Archae - 0; Bacteria - 441; Metazoa - 304; Fungi - 244; Plants - 1533; Viruses - 7; Other Eukaryotes - 103 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03000.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 30893 Blast hits to 17053 proteins in 804 species: Archae - 45; Bacteria - 3195; Metazoa - 9909; Fungi - 5711; Plants - 4804; Viruses - 543; Other Eukaryotes - 6686 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR