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GT17147

CSHL Arabidopsis genetrap mutant lines

Original: GT17147

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17147

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 697691 [Map]; Strand: w
      • AT2G02560.2 - [+] show detail - cullin-associated and neddylation dissociated
        Distance: 95; Region: intergenic
      • AT2G02570.1 - [+] show detail - nucleic acid binding;RNA binding
        Distance: 260; Region: intergenic
    Flanking Genome Sequence: GT17147 - 3-prime edge
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAA 
    ATTTATTTGA CAAATAACCG CACCGTTTCA TGTTAGGCCA TCGCGCGTCT
    CACCGCTTGA CAGACGACTG CATGCCGTTT GTACTCAATT TTAAGATGTA
    CGAAACATAT TCAAAACTCA AAAAATCATC GAAAGGCAAA ACAAAAGGCT
    AAAACCCCTC AAAAATAAAA CAGCGAGACG GCAACAACAA ACAAACAAAG
    GTCCAATGAA GAAAGCATAT ATTAAAAAAA TTCTTCTTCG CCGATTGAGA
    AATTTAAGTT ATCGAGTCTT TTTTTTTCTT TCGCTGTACC CTTTTTTGGA
    ATAGAAAATC ATCATCGATC ACTGTTTAAT GAAGACAACA TACACAAAAA
    CTTACTCATT CCGGATTGTC TGAAACTTCT CCCACAATGG TACAGACC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 697743 [Map]; Strand: w
      • AT2G02560.2 - [+] show detail - cullin-associated and neddylation dissociated
        Distance: 147; Region: intergenic
      • AT2G02570.1 - [+] show detail - nucleic acid binding;RNA binding
        Distance: 208; Region: intergenic
    Flanking Genome Sequence: GT17147 - 5-prime edge
    CCTACTTTCT CCCTGAATAA ATTAATGAGT CAGCTTGACT AATTTAAAAC 
    GGCAGAGATT TTACCGACCA AATTACACAA AACAGTATGA ATTCAGCACT
    GAATTCTTCG CATAATTCAG CACTATTATT TTTTATGAGA TGCATGCAAA
    TAAGTGTCCT TCGACATGTT TATTAATTAA CTCTAGTTTC TTTGGTTATA
    TGATGTACAA ACCATTAGAA ACCCCATACA ACATAGAAAA ATACTCAATT
    TTAATCAAAA GGAACAAAAA CTACGACATG GAAAATATAT ACTTAACAGT
    TAACACCATT TTTCATTATG AAACTTGATA CAAATACATT AAAATGGTGG
    GTCTAAAGTT TTTCTGAATT AGTATTTTAA ACATAAACCG TATGATGCGG
    CACAGTTCAA TATGAGACAG TGAGAGTGAT TCATCAATAG ACAACTTACC
    ATCCGAAGAA GAAACAACAA CAATGTTAAC GGTAATGCCG TTTTGGCTGT
    GGCTCTAT

AT2G02560.2

Model type
Protein coding
Short Description
cullin-associated and neddylation dissociated
Curator Summary
Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.
Computational Description
cullin-associated and neddylation dissociated (CAND1); FUNCTIONS IN: binding; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, vegetative to reproductive phase transition of meristem; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), TATA-binding protein interacting (TIP20) (InterPro:IPR013932); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02570.1

Model type
Protein coding
Short Description
nucleic acid binding;RNA binding
Computational Description
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR