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GT17132

CSHL Arabidopsis genetrap mutant lines

Original: GT17132

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17132

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4794759 [Map]; Strand: c
      • AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -891; Region: promoter
      • AT5G14830.1 - [+] show detail - transposable element gene
        Distance: -10; Region: promoter
    2. Chromosome: 4; Position: 11104180 [Map]; Strand: w
      • AT4G20715.1 - [+] show detail - transposable element gene
        Distance: -10; Region: promoter
    3. Chromosome: 4; Position: 11120510 [Map]; Strand: w
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    4. Chromosome: 4; Position: 15552375 [Map]; Strand: c
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon12 (CDS)
    5. Chromosome: 3; Position: 23115009 [Map]; Strand: w
      • AT3G62490.1 - [+] show detail - transposable element gene
        Distance: -10; Region: promoter
    Flanking Genome Sequence: GT17132 - 3-prime edge 
    GCTCTCGCTC TCTCCTCTGC GAATTATTTT GTACTCTCGA TTCTTTATCT 
    ATTTTTCCGG CAATGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15216568 [Map]; Strand: w
      • AT4G31350.2 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: 712; Region: intergenic
      • AT4G31351.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1119; Region: intergenic
    Flanking Genome Sequence: GT17132 - 3-prime edge 
    GGTAGAGGTT TTTACCCACC GTTACCGACC GTTTTCATCC CTAGCTACAA 
    ATCATCTTCG GCCATGAATG CTTCGATCGA GAGAAACATG CGAAACAGAG 
    AAAGATTTGA TGATAATTAA ATTTAGAAAC CCTAGAAATC AAGAGAATTA 
    GAAGATTACT TACAGAGGAT TATCGCTCCA AATCGTCTTC TGTCATGATA 
    AAGCGATCGA GAGAAATATG CCAAACAAAG AAACAAGAAG GTAAAACAAA 
    GTTCTGAGAA ATTATGACGC TCTCTGATAA CCTTCCCCTT TTTTATAGAC 
    ACTACAACGG CGGTGCCAGC TGGCTGATTT CCTTTTTTCT GTAACGCCAA 
    ATTTCTTCTT TTTTAGTTAA CATAACTTTA CTTATTTGTA GTTTCCATTT 
    ATTAAAAGTG GGCCTTATGT TAGCCCAATT TAAATTAAAA GTGTGCCATA 
    TAAAAGCTCA TAGCTTCTCC AAATGATGAT GAAAGAAAGT TGAAAAAAGA 
    GAGCTCCTCC TCGCCTTCAA CTTCCATTCA GTTTGGACTT TCGAGACATT 
    A

AT3G62490.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT4G20715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)
Link
InterPro Scan - TAIR

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT4G31350.2

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 585 Blast hits to 585 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 553; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31351.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31354.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14830.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retrotransposon family
Link
InterPro Scan - TAIR