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GT17127

CSHL Arabidopsis genetrap mutant lines

Original: GT17127

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17127

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 222101 [Map]; Strand: c
      • AT1G01610.1 - [+] show detail - glycerol-3-phosphate acyltransferase 4
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT17127 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACTCAAAAG 
    GAGTCTTGCC ACCACCGTTT ACCGTCATTT CTTCGGGCAA ACGGTCCAAG 
    AAAGTGGCCT CGTAGCTAGG TCGGGGGTTC ATGAAGAAGA AGTACGGATC 
    CCAGAATTTC ACACCTCTAA CTGTCGTCCC GTTGAACATC CCTTGCTTGC 
    AGTTCATGGC TACCCGACCG GATCGTATCG GTATATTCAT CCTCACTCGA 
    CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33638 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -162; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -453; Region: promoter
    Flanking Genome Sequence: GT17127 - 5-prime edge 
    CGTCCTTAAG CTGAGCCTGT TTCTGTGTTT TGATCATTTT GCCTTAAATT 
    TCTTCTTACT TCACGATATT TGTGTGTGTA ATTGTTAACC AGTCGTGTAA 
    ATCCAAAAGT TCATATATGA CCGTAAATTG ATATAATTCA ATAACAAGGA 
    AAGTTCTAAG CCTAAAACAA GCAAGAAAAT ACCTTTGCCG TATACAAAGA 
    TTATTAGCAT TATTATCGAC ATCACAGAAT GTAGCCCGTC TAGCTCAGTT 
    GGTAGAGCGC AAGGCTCTTA ACCTTGTGGT CGTGGGTTCG AGCCCCACGG 
    TGGGCGATAG TGTTTTTTCT GTTGTTTTTG TAAAGAGCTG AAGTTATAAA 
    TGGGCTTTGA AATTAATGGG TTCGAACACC AACGGTGGGC CTTTTTTTCT 
    TTCTATTTTT GTAAAGAGCT GAATTTTAAA ATGGGCTTTC AAATTAATGG 
    ATCAGTGAGG TTAAGGCCCA TATTTTCTAA TAAAATTAGA AGTAGTTACA 
    AACCCGACCC GACCCGGTTA CGTGTATGCG GAGATCACTC TCCTCTCCAT 
    AAGCTAAGCT CTAGAAACAC CGCCTTTAAC GTCTCGCTGC ACCATTTT

AT1G01610.1

Model type
Protein coding
Short Description
glycerol-3-phosphate acyltransferase 4
Curator Summary
Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8.
Computational Description
glycerol-3-phosphate acyltransferase 4 (GPAT4); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, cutin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1); Has 410 Blast hits to 396 proteins in 34 species: Archae - 0; Bacteria - 20; Metazoa - 10; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR