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GT17121

CSHL Arabidopsis genetrap mutant lines

Original: GT17121

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17121

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 222095 [Map]; Strand: c
      • AT1G01610.1 - [+] show detail - glycerol-3-phosphate acyltransferase 4
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT17121 - 3-prime edge
    AGACGGTAGA GGTAGTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    CAAAAGGAGT CTTGCCACCA CCGTTTACCG TCATTTCTTC GGGCAAACGG
    TCCAAGAAAG TGGCCTCGTA GCTAGGTCGG GGGTTCATGA AGAAGAAGTA
    CGGATCCCAG AATTTCACAC CTCTAACTGT CGTCCCGTTG AACATCCCTT
    GCTTGCAGTT CATGGCCACC CGACCGGATC GTATCGGTAT ATTCATCTCA
    CTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26642608 [Map]; Strand: c
      • AT1G70660.1 - [+] show detail - MMS ZWEI homologue 2
        Distance: 459; Region: intergenic
      • AT1G70670.1 - [+] show detail - Caleosin-related family protein
        Distance: -1974; Region: intergenic
    Flanking Genome Sequence: GT17121 - 5-prime edge
    CTTTCTCCCT GACTTGATGG TTAGTAAAAC TGGTTAAGTT AAAGAGGTGT 
    TCGACTTAGC ATCGCTATTT TGTAGAATTT AGTTACATAT ATCTAATCAT
    TCCGCTACTT AACAATCGCA TGCATCGACT CGAGTATCAT ATATTCATAT
    CTATAAGTCG GATTTGTTGC CTTGTTTAGT ATTGCTATTT GTCAAATCTA
    TCAGTCGGAT TTGCCACTGC CGTTTCAACT GCATGTTCTA CGTGTTCTGT
    ATGTCTGTCT AATCGATCTC TAAACACTTC AAATTGTTCG CATATTCTCT
    AACCACACTG CTTAAAGTTT GGTTCTCAAG ATCCGAAGAG TAGAATGTGT
    CTACAACTAC GTGACTATAA CGAACATCTT TCATCATTCT TCCCAAATGA
    AAAAGTAATT ACCTGCAACT TTTGCTTTAT CAATTATATG CAAAAG

AT1G01610.1

Model type
Protein coding
Short Description
glycerol-3-phosphate acyltransferase 4
Curator Summary
Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8.
Computational Description
glycerol-3-phosphate acyltransferase 4 (GPAT4); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, cutin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1); Has 410 Blast hits to 396 proteins in 34 species: Archae - 0; Bacteria - 20; Metazoa - 10; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70660.1

Model type
Protein coding
Short Description
MMS ZWEI homologue 2
Curator Summary
MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible.
Computational Description
MMS ZWEI homologue 2 (MMZ2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 3691 Blast hits to 3691 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 1966; Fungi - 516; Plants - 688; Viruses - 0; Other Eukaryotes - 521 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70670.1

Model type
Protein coding
Short Description
Caleosin-related family protein
Computational Description
Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70680.1); Has 341 Blast hits to 336 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 278; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR