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GT17053

CSHL Arabidopsis genetrap mutant lines

Original: GT17053

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17053

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9122508 [Map]; Strand: w
      • AT2G21310.1 - [+] show detail - transposable element gene
        Distance: -114; Region: promoter
    2. Chromosome: 2; Position: 9125847 [Map]; Strand: w
      • AT2G21320.1 - [+] show detail - B-box zinc finger family protein
        Distance: -416; Region: promoter
    Flanking Genome Sequence: GT17053 - 3-prime edge 
    TGAAACGGTA GAGGATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG 
    CGCTCATCAA ACGGTTACCA TTTGAATCTA GACATGTTGT TGATGTAAAA 
    AACTTGAATC TTTAACTGTT TTATGCGGAA GCTCTCACTA AATCTCTCTT 
    TGTTCGATCA CTCGTGTGTT TAGACAAAGA AAGTAAAACA GACACAAGCA 
    AATGTTAACC CAGTTCACGT TCAGTGATGA ACGCTACGTC TGGACCGAGA 
    TTACCCGGAA ATCCACTAGA AAGCCTTGGT TACACAAACC CTTAGAAACA 
    AGACTGAATA AACTTTCAGC TGCCTCTCTT GCACTTACTC TCTTAACCCT 
    AATGTCTCAC TTATCTTCTC CTTTATACAA CTCTACTCAC CGCCACGCTC

AT2G21310.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G21320.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G38960.1); Has 1943 Blast hits to 1369 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR