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GT17047

CSHL Arabidopsis genetrap mutant lines

Original: GT17047

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17047

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134892 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -922; Region: promoter
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17047 - 5-prime edge 
    TAAATCTGCT TCAAGTTTGG TTGCTTTAAT GGTGGTATTA TATCAGTACA 
    CATCATTCCT AGCAGTAATG GCTTGCTTAA CTTGATCAAA TGTTCTCCCC 
    TCAATCTTCA TCTTCTCATC AATCACTCTC TCTAGATTAT CCGGATAATG 
    AACTCTTATA TACTCAAGAT ACCTTCTTTC TGAATCTTCT TGTCCCAAAT 
    CAGGTCTTAG ATTTGTAATC ATCTCCACAA AAAACAATCC AAAGTTGAAT 
    ATATCTGTAA TAACACAACA ACAACAACAA CAACAACAGA CTTAGCTTTT 
    ATAGCCTTAA AAAGGTTTTG ATTTTTGCAA GAAGAAGATG AAGCCTTACT 
    TGTTGACAAG TTGTTTCTAT CTCCAATCTT GAAATGAGAA ATAAAAGGTT 
    CTTGATTATC ATCGGATAAC AAAACACTGC TTGTGGTGAG ATCAAATGTA 
    ATCTCTGGCC ATTGATCTG

AT4G20780.1

Model type
Protein coding
Short Description
calmodulin like 42
Curator Summary
Calcium sensor involved in trichome branching.
Computational Description
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20790.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR