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GT17041

CSHL Arabidopsis genetrap mutant lines

Original: GT17041

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17041

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134766 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -796; Region: promoter
    Flanking Genome Sequence: GT17041 - 3-prime edge 
    AGAGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA ATTGAATACC 
    TTGTAAAGCT TTATTGGTTT CTTTTGATTT TCAGACATCT GGTGTTAGAT 
    AGTATTGTAA GGATTAAAGA CATATTTGTG TGTTTTTTCT TTGATTACTA 
    TAAGTACTGA GAGAATTTGC AGAAAATGAG TACTTAATTT GCAGACATGA 
    AATCTGTAAA TGGGCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134863 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -893; Region: promoter
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17041 - 5-prime edge 
    TAGACTCATA CAATGAACTC ACCAAGTCAT AAATCTGCGT CAAGCTTGGT 
    TGCTTTAATG GTGGTATTAT ATCAGTACAC ATCAGTCCTA GCGTAATGGC 
    TTGCTTAACT TGATCAAATG TTCTCCCCTC AATCTTCATC TTCTCATCAA 
    TCACTCTCTC TAGATTATCC GGATAATGAA CTCTTATATA CTCAAGATAC 
    CTTCTTTCTG AATCTTCTTG TCCCAAATCA GGTCTTAGAT TTGTAATCAT 
    CTCCACAAAA AACAATCCAA AGTTGAATAT ATCTGTAATA ACACAACAAC 
    AACAACAACA ACAACAGACT TAGCTTTTAT AGCCTTAAAA AGGTTTTGAT 
    TTTTGCAAGA AGAAGATGAA GCCTTACTTG TTGACAAGTT GTTTCTATCT 
    CCAATCTTGA AATGAGAAAT CAAAGGTTCT TGATTATCAT CGGATAACAA 
    AACACTGCTT GTGGTGAGAT CAAATGTAAT CTCTGGCCAT TGATCTGATA 
    GATAACAAAT ACCTTCTACA ACTCCTAGAA CTACTCTTAA CCT

AT4G20780.1

Model type
Protein coding
Short Description
calmodulin like 42
Curator Summary
Calcium sensor involved in trichome branching.
Computational Description
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20790.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR