1. Home
  2. Mutant Lines
  3. GT16940

GT16940

CSHL Arabidopsis genetrap mutant lines

Original: GT16940

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16940

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19471282 [Map]; Strand: c
      • AT2G47440.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16940 - 3-prime edge 
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTCTCAGA 
    TACAAACCCG ATAGAGCCTC TTCTTTCATC TCACTCGACG CAGATCCCGA 
    TCAAAACGAC GTCGATTCGG TTAGAGATCG AGCCAAAATG TCGTCTCTGT 
    TGCTTTACCG TTTGATTCAG AAAGGATACA CCGCCGTGAC AGCGATCATA 
    GCCGAGGAGC AGAGGAAGAA CGCCATTGCT CACGCTCAAA AGATTGAAGA 
    ACGCAAACCG GTTGAAAAAT CCGGTTCTAT TAAGAGAACC GGAAACGCTG 
    AAACGAAACC GGTAAATTCC AATGCGTACC AAGGAGTATT CTGTAGAGAT 
    CTCGCTGCGG TTGGGAATCT ACTAACCAGG GCTGGTTTCA ACCATCCAAT 
    CCCGGTTAAA TACGAAGCGC TCACCTGCTA AAAAATATTG AACCGAATTT 
    TTTATCCTAC CATGTCAGCC ACTGGAAACG TCGTCGTTTC CGTAGATTCG 
    TCTTCGGACA GAAAAACAAA TCATTCAGCC GTCAAAAAAG AAAATAAAAT 
    AAGAAAATAT ATATACATTT GATGTATGAA TACAAATGAA ACAATGTATT 
    TAGGTTTGGA AGATTATTCC AACTACAAGA AAATTTTGTC ACTTTACTTT 
    TATCTTCAAT GTTCGTCTCC TTTGTTTCTT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26017956 [Map]; Strand: c
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16940 - 5-prime edge 
    CCTCTGTTTT GTTCTGTTTC TCGATCTGAG GCAGTGGAAG TTCAGAACTA 
    TTGCAGATGG ATTCGATCTT TGCGTTGATA GACGGAGACA ATATCTGTTT 
    ATAGTGTCCT TGACGAACAA TGTCTGGGAA ATTGAGACGA GCGTTGTCTC 
    CTCTGATCTT ATGAGCTGCT TGATCGTAAG CTAATGCAGC TTCTTGAGCC 
    GTTTCGAACG TACCGAGCCA TAACCGGGTT CGGTTTTTAG GTAGCCGAAT 
    CTCAGCTACC CATTTACCCC ATTGCCTCTG TCTTACGCCT CGGTATAGTT 
    TAACCGGTTT AGTTGCTACG TCGATTTTCT TCATTGAGGT TGGTTTAGCG 
    GTGAGAAGAT GACTACCAGC GCGACGACGA GATTGGTTTT GCCGGAGATG 
    TAACTCTGTC TGAATTTGGA GGATTTGTGT TGGAGTGAGC TGGTTTAGCC 
    CAATCCGGAC CGGTTTGGTT AGATACCGGT AAGACTTGGT CATTATTAGG 
    GATGAAATTA GGAGTTAATG GTTTTTTGGA TTTGATGAAT T

AT2G47440.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G62570.1); Has 357 Blast hits to 345 proteins in 102 species: Archae - 0; Bacteria - 6; Metazoa - 79; Fungi - 59; Plants - 180; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65130.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR