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GT16889

CSHL Arabidopsis genetrap mutant lines

Original: GT16889

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16889

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1871429 [Map]; Strand: c
      • AT4G03935.1 - [+] show detail - other RNA
        Distance: 0; Region: intron2 (NonCoding)
      • AT4G03930.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16889 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCC 
    ACAAGAGATT CATCATCTAT ATAAAGACAG GCATTTATGA TGAAATCGTC 
    GCCATTGAGA ATACGAAACC CAATTTAACT CTTATAGGTG ATGGTCAAGA 
    TTCAACCATC ATCACGGGCA ATTTAAGCGC TAGCAATGTT AGAAGAACGT 
    TCTACACTGC AACTTTTGGT AAGAGTTTGT GTTCTATTCT TGAATAATTT 
    ATAGTTTTAT CTTCTTTATA CCAAACTATA ACATTCTTAA AGACAATTCT 
    AATTATACTA AAAATATGTT TGAAGCTTCT AATGGTAAGG GATTCTTCGA 
    AAACTCGACA AGTGCTTCCG AAACACGGCC GGGCCGGCAA AAGGACCAGC 
    TGTTGCCCTC CGTGTGAGTG GTGATATGTC CGTCATTTAC AGATATCGTG 
    TCGAGGGGTA TCAGGATGCC TTGTATCCTC ACATAGACCG CCAGTTTTAT 
    AGGGAGTGCT TTATTACCGG TACTGTAGAT TTCATTTGTG GAAACGCAGC 
    GGCGGTATTT CAATTCTGCC AGATTGTAGC AAGACAGCCT AAGATGGGGC 
    AAAGCAATGT CATAACCGCT CAATCACGCG AGACTAAGGA CGACAAATCG 
    GGCTTCTCAA TTCAAAACTG CAACATCACA GCAAGTTCGG ATCTAGATAC 
    AACAACCGTA AAAACGTATC TTGGAAGGCC TTGGAGGATA TTTTCAACAG 
    TCGCGGTTCT GCAGTCTTTC ATCGGTGATT TAGTTGATCC CGCAGGCTGG 
    ACTCCTTGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1871375 [Map]; Strand: c
      • AT4G03935.1 - [+] show detail - other RNA
        Distance: 0; Region: intron2 (NonCoding)
      • AT4G03930.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16889 - 5-prime edge 
    CCTACTTTCT CCCTGCTTGT GGCTGTGTTG AGGTGCCGCT GCAATGGCCG 
    CATTCACTGT GTTGTACTTT CCGGTCCCAT CTTTCGCGAC CACAACATCG 
    ACAATCTTTT TTAGAGCCTG CTTTATAAAA AACAGAAGAA ATTCTATAAG 
    CAGTAGAAAG AAAGAGAAAA ATGATAAAAG GTTTGTTAAG AGATGCAAAG 
    ATATCGATTT ACGTGACCTT AAGGTCTATA TTTATAGAAC TGGTGATCTC 
    TAAGGAAAAA GAATTTATCT ACAAGTAAAT ACAATAAAAG GTAAATATAC 
    AAATCCTAAA TATTTGTTAC TTGAGTATCA AGTCTATCCT TAATTTGTTT 
    TTCACGATTA TCAAATTATA ACTTAAAAAT ATTAGGGTTT CGTTTTATTA 
    CCTCAAAATT GAGATATAGA TCTTTCTTGT CAACATGAGA TAACCAAGAC 
    GGGCTATTGG GAACCACCGA GTTAAGTTCG GTGTTGTCTC TCGGCGAAAT 
    GGAGATAAAA AGAGCCAAAG CTACCTTTGC CTTAGAAATG AGGTCTTGAA 
    GTTGTGGCTC GACCCGACGT TTATAGGCAC CGTCACCAAT TTCGTCGATA 
    CATGTGATGT AGCTAGTAAG AACGCCACTG AGCCAAGTGT GGATGTTTTC 
    GTAAGAT

AT4G03930.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1); Has 2758 Blast hits to 2712 proteins in 365 species: Archae - 6; Bacteria - 703; Metazoa - 1; Fungi - 192; Plants - 1830; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03935.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR