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GT16885

CSHL Arabidopsis genetrap mutant lines

Original: GT16885

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16885

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1587941 [Map]; Strand: w
      • AT4G03565.1 - [+] show detail - Cystatin/monellin superfamily protein
        Distance: 207; Region: intergenic
      • AT4G03566.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 623; Region: intergenic
    Flanking Genome Sequence: GT16885 - 3-prime edge 
    GAAACGGTAG AGGATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TCCACTTAAT GTTTTTGAAC TGTATGTAGA TTGACCGATT CAACCAGCTG 
    GAAGCCAATT CGGCATTTAG GGGAAGCTGA CGCAAATTTC CGGTAAGAAG 
    ATCCGGTCTA AAATAGTGTT TCCGGTGATC AGGATTTGTC ACTCCCGCTG 
    ACAATAATAT CTGATAGCTT TTCATATTAA CCCCTAAAGA ATGTTTGATA 
    TCCGATTTGT AACAAATCTG GATCTAGCTT AGGACTAGGC CTGCAAAACA 
    TAGGATAAGT CTTACATTGT AATTTCTTCA CAACCTTGGC TTGATACTCC 
    ACAAGCGTAT CATCGTCCTC AGACTCTTTC GCCATAAAAG TAATATACGA 
    AACCCACCTA CCAGTGAAAG ACCCTGTCAC TCTTACAACA TGATCCAATG 
    TCACATTGGT TTCCTGAAAA CACAACCAAA GGAAAAATAA AAACAAGTAA 
    TAACAAGGCC AATTCACACA TCTTAAACAA ACAAAACAAT GTTAAAATCA 
    GAAATTACCT TTAAGGCATT GTATTTGCGA AGACACAATT TGACCATGTC 
    TTGTGCGTAT TGAAGTTGTG TCCTTCCTTT AACCGGAGAA TGTTCACTGT 
    CCAATGGTTC AAGTAAGATT GCACCAATCC ATACGGAACG TGGATGAATC 
    CCTTTTTCCA CCAGAAAACC CTAAACCTCA AAACAAAAAC CCAACAAATT 
    ACATTATACA CTAAATAACA TTTGAATTAG GAAAAGACAA AAACTAAATT 
    TCGAATCATG TATATACGAA CACGACTAAA AGTGGAGATT TCGACGATAA 
    AGACGTCTTT TACGCTCATC TTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1874773 [Map]; Strand: w
      • AT4G03935.1 - [+] show detail - other RNA
        Distance: -86; Region: promoter
      • AT4G03940.1 - [+] show detail - unknown protein; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bac...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT16885 - 5-prime edge 
    TACTTTCTCC CTGCGGATAG GTTATGGATT CCCATTACCT TTATAAAGAA 
    GAAGAAGAAG CTGGTGTGAG ACAAGTGTCG AACAATGAGA CAAGGGAGAA 
    AGACTCTTAT TGTAAGAGAG GGTCTTAGCT ACTATCTTTA TTTTAGAACT 
    ATGTCGTTTT AGGTCTCTTC TTCTCCACCT TAAAGGTGCA ATACTTCTCT 
    CCCTCCATTT TTGTCTGTTC

AT4G03565.1

Model type
Protein coding
Short Description
Cystatin/monellin superfamily protein
Computational Description
Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03566.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03935.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT4G03940.1

Model type
Protein coding
Computational Description
unknown protein; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR