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Mutant Lines
GT16854

GT16854

CSHL Arabidopsis genetrap mutant lines

Original: GT16854

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16854

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 3109017 [Map]; Strand: w
- AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
  Distance: -840; Region: promoter
- AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: 0; Region: exon2 (CDS)

AAACGGTTGA GGATTTTACT TGACTCAAGT GACTCAGGTT AGAGTGAAGT 
TCACTGACTC GGACCGTTAC ATCATGAGGA ACGTTAAAGG ACCTGTCAGA 
GAGGGAGATA TTCTCACCTT GCTGGAGTCC GAGAGAGAAG CTAGAAGACT 
TCGTTGATTC TCTTTGCAAA TTGTTTTTGG TTGCTTTGAA GAACAAATGT 
TATATCGTTT GGATAATTAA ATTCTTATTA TGATGTTAAA AAATTTAATT 
ATCAAAGATT GATGCTTTAG ACTCTAAATC TATATTATAT TAAAAATCAT 
TTCTTTATCT TCACTTTGTT ATATCAAAGA AATAAGTCAT GTTTCACACT 
CTGCCTAAAC CTTTACCACC GAAAAAATGA TGTTCATGTG CCTCTCTAAT 
CATGCCTTGG AGATAACAAA AAGCTTAAGC AACAAATTCA TCATTTTGAA 
TATCATGGCA TGCGCACACA GCACGCCTTA TACGGGCCCC TGCTTCAGCC 
CAAGACATAG ATTTGGTTAT GCCTATACCA AAATTACATT ATAAACCGGG 
ATTGACACTA GGATCCGAAA CCTTGGACTC CAGTTATATT TCCATTTTTA 
TGCACAATTG TATTAATTTG TAACTATGAA TTACATAGAC GAATAGTAAA 
TTCATAAGAG ATGTGTCAAT CAAGCCACAA AAGGGGTTTA TCAGTCAATG 
TACCGGCCTA ACCACTCCCA TAACCAAAAC CACATATCCA AACGTGGTTT 
TTCATTTGGT ACAAAAACCC ACACCTTATT T

AT3G10080.1

Model type: Protein coding
Short Description: RmlC-like cupins superfamily protein
Computational Description: RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G10090.1

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link: InterPro Scan - TAIR