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GT16585

CSHL Arabidopsis genetrap mutant lines

Original: GT16585

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16585

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551807 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT16585 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCATGACACA 
    ACTAGCTCCA CCAGATTCTT GAAGAAGTTG GTTGTAGGCC CTCATTGCTA 
    CCATCAGATG TTTCTTTCAC CATAAAAATA TTTTGTAAAA ATCAGATATT 
    TATTAGTGAC TATTATAAGA TATAAGACAA AATGAATAAT CATGATTTTC 
    TAATTACCTG ATGTTGTAAT AATCATATGT CGTCCGACGT TGAGCAAATG 
    CCTCAAAGCT ACTGTTTCTT TGACCACATC GTTGAGCAAA TATCTCAGGA 
    AGGATCCTTC TGATAACAGC CAATTTCTCT GGTTTTGGGG TGGTTGAAGA 
    AGACTCCTCC GTTGGAGATT TCTCCTTTGA TTTATTTGAC TTCTCTGCCA 
    CTTTTTTTGT CTCTCTTTAC CATCATCAAC TCCAGAAATT CAACTAGGCA 
    ATAACATACA CATGCTCCGA TTCATAGATA TTCACAGAAA TAAACCAAAT 
    CAACAAAGAG AGAGACAAAA AACATTCTTT TACGTACCTA GTGGTTCAGA 
    ACTTGGAGGG GCCGACTTCG GTTCAGAACT TGGAGGGGCC GACTTCGGTT 
    CAGAACTTGG AGGGGTCAAC TTCTCTTCTT CCATGAAGAA ATGTCCAAAT 
    CAACAACCAT TTTATAACAT ACACATGCTC CGATTCATAA TATACACAGA 
    AATAAACCAA ATCAACATCT ATTTTTTACG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551871 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT16585 - 5-prime edge 
    CCTACTTTCT CCCTACATGT TTCATGACAC TCCTATATTT ATAAATCTTT 
    CGCGTATTAC CTATGTCGCA AATAAAAGAT TTTGGTTAAC CGCTAAAAGT 
    TGAAAAGAAT TGATCACCAA AAGCTTGTAA TTCGAATATT CGGTTATGAT 
    CTGTATCTTT GCTAACTCAC TTGTTACCTA ATTGTAGTTC GAATTCGAGT 
    TCTATGTGCT CTTGTTGTCA CCTGTTGTCT GTGCAATAAT GGGATCCCAA 
    CATCCCCGAG GATGGCCTTG TCGTTATCAA TGGGCCAGAT GACAGTAAAG 
    CGAGGTTCAG TACAAAGTGA TCATTTCCGA ATCGATTCGT ATTTCGAACG 
    TATCTGACAC GTGTCAAATC GCCGCGTCTG TACGCGCGCG TGAAGCTCAG 
    GAACCGAAGC GTCTCGTAGG TTTAATGATG ACCTCGTAGG TTTGTCGCCC 
    AATCGCCTCT ATTTATATTA GATTAAACCC TCGGGAAATC ATTTTCCGCC 
    GCTTGCAAGA AGAATCTAAG GTAGCTCTCG CTCTCTCCTC TGCGAATTAT 
    TTTGTACTCT CGATTCTTTA TCGATTTTTC CGGCATGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551865 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT16585 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT ACATGTTTCA TGACACTCCT ATATTTATAA 
    ATCTTTCGCG TATTACCTAT GTCGCAAATA AAAGATTTTG GTTAACCGCT 
    AAAAGTTGAA AAGAATTGAT CACCAAAAGC TTGTAATTCG AATATTCGGT 
    TATGATCTGT ATCTTTGCTA ACTCACTTGT TACCTAATTG TAGTTCGAAT 
    TCGAGTTCTA TGTGCTCTTG TTGTCACCTG TTGTCTGTGC AATAATGGGA 
    TCCCAACATC CCCGAGGATG GCCTTGTCGT TATCAATGGG CCAGATGACA 
    GTAAAGCGAG GTTCAGTACA AAGTGATCAT TTCCGAATCG ATTCGTATTT 
    CGAACGTATC TGACACGTGT CAAATCGCCG CGTCTGTACG CGCGCGTGAA 
    GCTCAGGAAC CGAAGCGTCT CGTAGGTTTA ATGATGACCT CGTAGGTTTG 
    TCGCCCAATC GCCTCTATTT ATATTAGATT AAACCCTCGG GAAATCATTT 
    TCCGCCGCTT GCAAGAAGAA TCTAAGGTAG CTCTCGCTCT CTCCTCTGCG 
    AATTATTTTG TACTCTCGAT TCTTTATCGA TTTTTCCGGC AATGGGTAA

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR