1. Home
  2. Mutant Lines
  3. GT16470

GT16470

CSHL Arabidopsis genetrap mutant lines

Original: GT16470

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16470

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13875858 [Map]; Strand: c
      • AT4G27860.2 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
      • AT4G27860.1 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT16470 - 3-prime edge 
    AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAT CTCCAGAAGA 
    AGGAGAAGGA GAAGAAGATC GATACGAGGA AGTACTCGGG AGAAGAGAGT 
    ATTCGAGGAT TCACAGAGTG ATCGCAATCT CTTCTTTCGT CATCTTCGGA 
    TTGATCCCAC CTTTAGTATA CGGTTTCTCG TTTCGAAAAA AGATGGAAAA 
    GAGACAAGAG TACAAGGTTT TAGCTGTTTA CGCAGTGTCT CTACTCTGCA 
    TCGTCTTGCT CTCAATAGCG AAAGCTTACG TGTCGAAGAA ACGCGATTAT 
    GTCAAGACTC TGTTTCGGTA CACGACGATG GCGACGACGG CGTCGGGATT 
    CTCTCAATTT GTGGGATACT TGGTGAGTCA ATGGCTTGAG AAAAGCGGGT 
    TTTATGATGA TTCTCCAGAA ACTCAACGAG TTTGAAACGA GTTCTTGTTC 
    GTCTTCTCTT CACTTCCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13875852 [Map]; Strand: c
      • AT4G27860.2 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
      • AT4G27860.1 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT16470 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATCTCC 
    AGAAGAAGGA GAAGGAGAAG AAGATCGATA CGAGGAAGTA CTCGGGAGAA 
    GAGAGTATTC GAGGATTCAC AGAGTGATCG CAATCTCTTC TTTCGTCATC 
    TTCGGATTGA TCCCACCTTT AGTATACGGT TTCTCGTTTC GAAAAAAGAT 
    GGAAAAGAGA CAAGAGTACA AGGTTTTAGC TGTTTACGCA GTGTCTCTAC 
    TCTGCATCGT CTTGCTCTCA ATAGCGAAAG CTTACGTGTC GAAGAAACGC 
    GATTATGTCA AGACTCTGTT TCGGTACACG ACGATGGCGA CGACGGCGTC 
    GGGATTCTCT CAATTTGTGG GATACTTGGT GAGTCAATGG CTTGAGAAAA 
    GCGGGTTTTA TGATGATTCT CCAGAAACTC AACGAGTTTG AAACGAGTTC 
    TTGTTCGTCT TCTCTTCACT TCCCCTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13875796 [Map]; Strand: c
      • AT4G27860.2 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
      • AT4G27860.1 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT16470 - 5-prime edge 
    CCTACTTTCT CCCTGTCTGG AGAATCATCA GTGTTGGTTT GTTTTCTGGG 
    TTTCTCGTTT ATTAGTTCTT GGAGCTGCAC AAAAAATGAA TCCTTTATTC 
    AATTCTTTGA GAGTTACATA CAACAGATGA GAAAGTGCAC TTACGCTGTG 
    AACAGTCAGA AGAAGTCCGC TTGATAAATT GGCAACTCCT AAGGCTAAAA 
    CGTTCACTGA ATTACAAGCA AAAGACATTA GCAATGTTTT AGGCGTTCCA 
    AGTGTTCGAC GAAATGCCTC ACAGAGAATG GGATCACTTA CGAGTTGAAG 
    CACCAGAAGC TGCCGCAGAT GTTACCGTGC ATAGGCTTGT GATGGATTCT 
    GTAAGACCTC CATACACAAT ACTTTTCAAG ATTTCGAGTT TATTACCGCC 
    TTTGCTTTGT TCAACACTAT TTGGGATCTC TGATTGAGCA TTAGGTGGCA 
    ACATAGGTTC TGTTTGAGTT TCCTTATTGA TAATTTGCTT GGAAGGTTGC 
    TCCAGTGGTG AAGGATATAT CGGAGTTAGG TGACTTTTTT GGTTCTCTAG 
    TATATTCAAG AATTTTTGTT AAGAACAAAA CTTAA

AT4G27860.1

Model type
Protein coding
Short Description
vacuolar iron transporter (VIT) family protein
Computational Description
vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27860.2

Model type
Protein coding
Short Description
vacuolar iron transporter (VIT) family protein
Computational Description
vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: embryo, hypocotyl, root, pedicel, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1).
Link
InterPro Scan - TAIR