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GT16458

CSHL Arabidopsis genetrap mutant lines

Original: GT16458

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16458

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 583769 [Map]; Strand: c
      • AT2G02210.1 - [+] show detail - transposable element gene
        Distance: -1719; Region: intergenic
      • AT2G02220.1 - [+] show detail - phytosulfokin receptor 1
        Distance: 209; Region: intergenic
    Flanking Genome Sequence: GT16458 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATC 
    AACAGAGTAT CCACAAAGCA AATCACAGAA TAAAGATGTA ACACAAATTA 
    TTAATCTATG TTGCTCATTT AAATTGCTTG AGACATGTTT TTTCAAGAAC 
    TCATTATTTC TGAAACACTA CAAAAAGATT TTTCATTTTT CTGAGACAGT 
    ATATGTTCTG TCTAGTATCT TTAATGTCTG AATCTGAATC ATAAACTGAG 
    ATAAAAAAAA TGGAAGAAGA AAACGAAGAA ACAAATTATT ATCTGAAAAC 
    TATTTACATT GTATCTCAAA AGTATGAAAA TCACTCCCTA CAAAATGTAT 
    CATAGTGTCT CTGATATTGT TCCTCTTTCT TCTAGACATC ATCAAGCCAA 
    GAGACTAACT GTTGAGTCGT TGGCCTCTGT TTCGGGTTTT CGCTTAAACA 
    TAAACAAGCA ATCTCGAGAA CCCGAAACAT CTCTTTATCA TTCTCTTTAC 
    TGTATATTAA CGGATCGAAA ACCTCGCTTG CTCGAACTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 583692 [Map]; Strand: c
      • AT2G02210.1 - [+] show detail - transposable element gene
        Distance: -1642; Region: intergenic
      • AT2G02220.1 - [+] show detail - phytosulfokin receptor 1
        Distance: 286; Region: intergenic
    Flanking Genome Sequence: GT16458 - 5-prime edge 
    ATGTTATTAC CTTTTAGAGA TTTTTGGTTT AATTAAAAAA TATATATATT 
    TTTTGGTAGC TAAATTCCTT TTGGTCTTCA ACAAAAGAAT TCCTTTTGGC 
    CAACTATAGT CAATTTTTTG TTAAGAATCC ATTACATTAA CTTATTTTTT 
    ATGGGTGTGA AAATAT

AT2G02210.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At3g32900
Link
InterPro Scan - TAIR

AT2G02220.1

Model type
Protein coding
Short Description
phytosulfokin receptor 1
Curator Summary
Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).
Computational Description
phytosulfokin receptor 1 (PSKR1); FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phytosylfokine-alpha receptor 2 (TAIR:AT5G53890.1); Has 188205 Blast hits to 128830 proteins in 4018 species: Archae - 120; Bacteria - 18455; Metazoa - 56562; Fungi - 9680; Plants - 79633; Viruses - 405; Other Eukaryotes - 23350 (source: NCBI BLink).
Link
InterPro Scan - TAIR