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GT16374

CSHL Arabidopsis genetrap mutant lines

Original: GT16374

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16374

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 460329 [Map]; Strand: w
      • AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
        Distance: -143; Region: promoter
      • AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
        Distance: -146; Region: promoter
      • AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
        Distance: -202; Region: promoter
    Flanking Genome Sequence: GT16374 - 3-prime edge
    GGGTTTGGTC GGTTTCTATG TTAATTTACT CAGTTGGTTT TGTTCCCATT 
    AATTAAATTA ATTAATTGGT ATTGCAAGTT GCAAGTTTGC AACCAATAAA
    AACCACAAGT ACCCGT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107272 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16374 - 5-prime edge
    ACTTTCTCCC TGGGTCCCTA CGCCTATTTC AAGGCAGCTC AAGAACGAGG 
    AGTCCCTGTG ACCTCCTCCC AAAACGGAGA TGCCTTGAGG GCTATGTCTC
    TGCAGATGGA TTCAACATCT CTCGAAAACA TGGAATCTGG CACTTCCACC
    GCTCCCAGAT GATCCTCCTC TCTTATTATT TGATTCATTA TTTGGTTTTT
    CATNTTTGAT TTGGCCGTCG TCGTGAGATT GTGAATGGTG TAGCTACATA
    CTGTATGTGT ATTCAAAACT CTACTTGTAC CATTACTTTT TTGTAAATCC
    ACTCTTCATG AAATTGACGT TTTTCTGGTG TCCGAGAGGC TTGGGTCGCT
    CGAATAATCT CGTCCAATAG ACTAATACGG CTCTAGTGAA CACGGTATTT
    ACATGTTTGT GATCTAAACT GAAATCAGTT ATTTCTTTAT TCGTAATCAT
    TCTTGGGTTA ACATTTTCTC TTATAATCTG ATGGTTGAAG ATGGCAAAGC
    CATTGTTAGC ATAGCCATAG CTGGTTCAAT CATCCACAAC ACTAAATTAC
    TCGAGCTCTC CACATGCGTA ATCTCTCTTT

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01060.1

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 2727 Blast hits to 2727 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2715; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01060.2

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01060.3

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR