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GT16149

CSHL Arabidopsis genetrap mutant lines

Original: GT16149

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16149

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 780571 [Map]; Strand: c
      • AT4G01810.1 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: -216; Region: promoter
    Flanking Genome Sequence: GT16149 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCT CTACGTAACG GTTAAATTCG 
    GGAGAAACGA CGTCGTTAAC AATAAACCTT GTGGTTAAAG ACCAATTTTC 
    TTTTGGTAAC TTCCTTTTTT GTCAAAGCTT TTACATAATT AGAAACAATG 
    TTAGTATAAA AAAATACCTT AAGCTCAAAA TATATTTTGA GAGGACTTAG 
    GAAAACAATT GTTTGTCAAC TAGAAGCACT AATGTGAAGT TGAACAAGCG 
    AAGCATAAAC ACCACCTTCG ATATTGATCA ACGTTTCGTG CGTCCCTTTC 
    TCTACGATCA CACCGTTCTT GACCACGGCT ATGACGTCAG CATTCTTGAT 
    CGTGGAAAGC CTGTGAGCCA CTACTACTGT GGTCCGGTTC ACCATCACTC 
    GGTCAAGCGC GTCTTGAACC ACCCGCTCCG ATTCTGCGTC CAACGCGCTC 
    GTTGCTTCGT CGAGTAACAG AATCTTCGGT TCTTTCACGA TGGCGCGTGC 
    AATTGCCACG CGTTGCTTCT GTCCTCCTGA CAATTGTATC CCTCTTTCTC 
    CCACCACCGT ATCATAACCC TAAATTGAAA TAAGAAAGAG TTTTTTTGCT 
    TGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 780034 [Map]; Strand: c
      • AT4G01810.1 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16149 - 5-prime edge 
    TTTGGGTAGA TTTTAGTTGA TATACACTTC TGCGGATTTT GATTTGCCGG 
    TGATTGAAAC AAAAACGAAT TGGTGA

AT4G01810.1

Model type
Protein coding
Short Description
Sec23/Sec24 protein transport family protein
Computational Description
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT2G21630.1); Has 8290 Blast hits to 5679 proteins in 621 species: Archae - 16; Bacteria - 1021; Metazoa - 2159; Fungi - 1153; Plants - 2353; Viruses - 447; Other Eukaryotes - 1141 (source: NCBI BLink).
Link
InterPro Scan - TAIR