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GT16128

CSHL Arabidopsis genetrap mutant lines

Original: GT16128

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16128

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15136620 [Map]; Strand: w
      • AT4G31120.1 - [+] show detail - SHK1 binding protein 1
        Distance: 0; Region: exon1 (5UTR)
      • AT4G31120.2 - [+] show detail - SHK1 binding protein 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16128 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTACG CTCGAGAAAA GAAGATTCAC 
    TTCCATCTGC AAATTCCTTC ACTCCCTGTG AGCTCAATAG AGAGAGAAGA 
    AGAGATGCCG CTCGGAGAGA GAGGAGGATG GGAGAGGACC GAGTCCAGAT 
    ACTGCGGCGT TGAGACTGAT TTCTCCAACG ATGTTACTCA TCTTCTCAAC 
    TTCAACATTT CCACCGGCGG TTTTGACTAT GTTCTCGCTC CTCTGGTTTG 
    TTTCCTTCAT CTCACTCGA

AT4G31120.1

Model type
Protein coding
Short Description
SHK1 binding protein 1
Curator Summary
Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational Description
SHK1 binding protein 1 (SKB1); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 957 Blast hits to 940 proteins in 238 species: Archae - 11; Bacteria - 37; Metazoa - 444; Fungi - 148; Plants - 166; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31120.2

Model type
Protein coding
Short Description
SHK1 binding protein 1
Curator Summary
Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational Description
PROTEIN ARGININE METHYLTRANSFERASE 5 (PRMT5); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR