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GT16127

CSHL Arabidopsis genetrap mutant lines

Original: GT16127

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16127

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15136640 [Map]; Strand: w
      • AT4G31120.1 - [+] show detail - SHK1 binding protein 1
        Distance: -1; Region: promoter
      • AT4G31120.2 - [+] show detail - SHK1 binding protein 1
        Distance: -3; Region: promoter
    Flanking Genome Sequence: GT16127 - 3-prime edge 
    TGAACGGTAG AGGTTTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACG 
    CTCGAGAAAA GAAGATTCAC TTCCATCTGC AAATTCCTTC ACTCCCTGTG 
    AGCTCAATAG AGAGAGAAGA AGAGATGCCG CTCGGAGAGA GAGGAGGATG 
    GGAGAGGACC GAGTCCAGAT ACTGCGGCGT TGAGACTGAT TTCTCCAACG 
    ATGTTACTCA TCTTCTCAAC TTCAACATTT CCACCGGCGG TTTTGACTAT 
    GTTCTCGCTC CTCTGGTTTG TTTCCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15136769 [Map]; Strand: w
      • AT4G31120.1 - [+] show detail - SHK1 binding protein 1
        Distance: -130; Region: promoter
      • AT4G31120.2 - [+] show detail - SHK1 binding protein 1
        Distance: -132; Region: promoter
    Flanking Genome Sequence: GT16127 - 5-prime edge 
    TTATATCGCG GCTTTTCTAA TGGGCTTTAT GATATGCTAT ACCTAGCCCA 
    TTTATGCCAT CCCAAGCTCC AACCATTGGC TCTAAACATG TTAATTGGTT 
    TTGACATAAA AGAGAGTCTT ATGGTTTGTG ATAGTAGTAC TAGACTACTA 
    GTAGCCACCC GAATTCAAGT GAATATTTAC ATATTCTTAG AAAGAAAAAT 
    GTAGATATAG TGTGTGATTT GAAGTGCTTT CTCATATCAA TTATGTCAAA 
    TGTAAGAGAT ATAACCAAAA GATTATTTTT CACATATACA GCTTATGAAT 
    CACAATGCAT CAAGGTGCAG AGATGGGTTT CATAACATTC TAGCCAATCA 
    TTAAAAAAAA AAAAAAACCC CCAAAAAAAC AAAATTTTTT TT

AT4G31120.1

Model type
Protein coding
Short Description
SHK1 binding protein 1
Curator Summary
Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational Description
SHK1 binding protein 1 (SKB1); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 957 Blast hits to 940 proteins in 238 species: Archae - 11; Bacteria - 37; Metazoa - 444; Fungi - 148; Plants - 166; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31120.2

Model type
Protein coding
Short Description
SHK1 binding protein 1
Curator Summary
Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational Description
PROTEIN ARGININE METHYLTRANSFERASE 5 (PRMT5); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR