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GT16089

CSHL Arabidopsis genetrap mutant lines

Original: GT16089

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16089

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12960 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron1 (CDS)
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: -567; Region: promoter
    Flanking Genome Sequence: GT16089 - 5-prime edge 
    ATCCTACTTT CTCCCTGCTC TAGTGTCCTT GATCTGGGGA AAACTTACAG 
    TGTTACTTTT GTTATATATC AGTCCAAGAG GGTTTTTAGC AACTCATTTC 
    TTTCAAAGGT ATTTTCTTCC CTTTACTTGT AAAATATTTG CTTCGACAAC 
    ATTTTCTTTG CTCTTTACAC CCTTTTGGGC TTATATGTTA GTCTCATACC 
    TCTCATCGTT TTTCTTATGC AGGACTCTAC TGGAGCTAAT GGTCAGCAGT 
    GATAATTGTG TAATCAAACT TCAAATCCTA GTGTTGATGT GAACCTTGTT 
    GTTCTGACAA TTGTCTGTTA TACAGGACTA TTGTTTCGCT TCCGAAACCC 
    GCAAGCAAGT ATATGTACGG AAGCT

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR