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GT15999

CSHL Arabidopsis genetrap mutant lines

Original: GT15999

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15999

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107962 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15999 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAACCTCATC 
    TCTCCTTTCT ACCGCTACGT GGGAAAAGAC ATGATGACTG ACCTCAAGTA 
    CCCTTTCAAG GACAACACCG TACCTATCTG GTCTGTCCCT GTGTACGCTG 
    TGCTTCTTCC CATCATAGTG TTCGTCTGCT TCTACCTGAA GAGGACATGT 
    GTGTACGATC TGCACCACAG CATCCTCGGG CTGCTCTTCG CCGTCTTGAT 
    AACTGGTGTC ATCACTGACT CCATCAAGGT AGCCACCGGA CGCCCTCGTC 
    CTAACTTCTA CTGGCGCTGC TTCCCCGACG GCAAAGAGCT GTATGATGCG 
    TTGGGAGGTG TGGTATGCCA CGGCAAGGCA GCTGAGGTCA AGGAAGGCCA 
    CAAGAGCTTC CCGAGCGGAC ACACTTCCTG GTCCTTTGCG GGGCTTACAT 
    TCCTTTCCCT TTACCTCTCT GGCAAAATCA AGGCCTTCAA CAATGAAGGA 
    CATGTGGCTA AACTCTGCCT CGTGATCTTC CCTCTGCTTG CCGCTTGTCT 
    TGTGGGGATA TCTCGTGTGG ATGACTACTG GCACCACTGG CAAGATGTCT 
    TCGCAGGAGC TCTCATTGGC ACCCTTGTAG CCGCCTTCTG CTACCGTCAG 
    TTCTACCCCA ACCCTTACCA CGAAGAAGGA TGGGGTCCCT ACGCCTATTT 
    CAAGGCAGCT CAAGAACGAG GAGTCCCTGT GACCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108026 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15999 - 5-prime edge 
    TCCTACTTTC TCCCCGGTTC AAGCCTATCT CGATGGCAAT CAAGATGACG 
    AGTATGATCC AATCGTGCTT GTGTTTAGAA GCGACTCTTC CTCCATGGGA 
    CTTTATAGTG TGAACACTAA GATCTATCTC CTGCATCCTC CCTCTCTGCG 
    CCTCCTGGTC CTGCCACCAA AAACACAAAC AATCATCACA GTCAACTAAA 
    CCTTCTTCTA ATTGGATCTA AACAAACAAT TCATGGCTCT CTAAGAAATA 
    CTACTTGAGG GTTAGGGCTT GACATCTCCG GTTTGGATGG ATAGTAACAA 
    CGGAATGCAA TTCATTCTAT CGGATGAACA AATTGGTTTA GGCAAACAAA 
    GAACTTTGTC AAAGACACGA CAACACTTTG CTCTACGGAT CCAGACACTT 
    TTTGTCTGTC TGATTCGTTA TGCTAAGCAC ACCACTGTTT CATTAACAAT 
    GTTTTCGTTG ACTCTATTTA ACTACTTTAT TTTCAATGTT AGGATTTTTA 
    AAATGATAAA GAAAAAAGGA GTAGAACAGA GAATAGTCGA TTGAGGTTAC 
    CTGAGAATTG CGCCTGAATA AGAGAGAAGA GAAAAACGCC CCTATTGTCA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR