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GT15954

CSHL Arabidopsis genetrap mutant lines

Original: GT15954

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15954

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4117320 [Map]; Strand: c
      • AT3G12915.1 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: 1612; Region: intergenic
      • AT3G12920.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 4563; Region: intergenic
    Flanking Genome Sequence: GT15954 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AGTTGGTTCC TAATGTGGAC AATAACCAAA CTATTTCCTC ACCTTTTTTT 
    CATCCATACG AAAAGTACAG TCTTTACTTG TAATTGTTTC ATGTCTTGTT 
    TCTATCCAAT ATATCAATGT CATGTCTCAA CCATATATTG TTTTTTGTCT 
    CGGATGGAAA CATAAGCTTC TAATTATATC CCTCATCTAA ACCACATGGT 
    GTTTTGATAT TTTGTACCAT TTAGTGGGTG AGAGGATGAT ATTTGCATAG 
    GTACAAATTA AAATAAATTT CCCAAAATTA AATCAGAAAA AAGGATTAGG 
    TCAAGTGGGC AACAATGGTA TAGGCTATTC CTTTTGCTTT AAAGCCTTTG 
    ATATCCTCTC ACCTCTCTAT TCCAAATTCA T

AT3G12915.1

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 62937 Blast hits to 55974 proteins in 4670 species: Archae - 1189; Bacteria - 40681; Metazoa - 3235; Fungi - 1899; Plants - 1092; Viruses - 1; Other Eukaryotes - 14840 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12920.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G79110.2); Has 1634 Blast hits to 1631 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 874; Fungi - 0; Plants - 566; Viruses - 36; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR