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GT15925

CSHL Arabidopsis genetrap mutant lines

Original: GT15925

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15925

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1176324 [Map]; Strand: c
      • AT2G03850.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: -575; Region: promoter
    Flanking Genome Sequence: GT15925 - 3-prime edge
    GTAGAGGTTT TTACCGACCG TTGCCGACCG TTTTCATCCC TATTAATGAT 
    CATGTAGATA GAGCAAAGTA CTATATGTTT GAGAAAGCTA GTGAAGCAAT
    CGACAATGTG GCTGAAATTG CTCAGTTTGC TTCGGAGTTT GTGACGGAGA
    AAGGCAAGGA GACGAAGAAA GAAACTGCTT CGATATCGGA GAAAGCCAAA
    GACTTCATTG TTGAAAAAGC CGGTGAAATT ATAGATATAG CGACGGATGT
    GAGCAAGAAA ACGGCCAAGT ACGTCGGAGA TAAAGCCAAG GAGGTTAAAG
    AAGCTATAAT GCCTCCAAAA ACTTAAAGTA AAGATTTGAT GCAGCCCTAA
    ACATATACGA GGTCTTGAGG CAATGTAGCA AAAAATATGT ATTATTATGC
    GAGATAATGA AAATGTTATA ATCAGAACTC TAAGACACGC CTCTTTAATC
    ATTGGAAAAT TCTCTTCTAA GTATGTAGTA TGAGATAATA ATTAGGATCC
    TCCTAGCAAG GTAATGATGC CTCGAAATAA GGATACAGTA ACCCAAGTGA
    TCAAACCGGA CTGCAACAAA ACCAGAGAAA GTAACAGATC GATCAATTTC
    AATTACGGTT ATCATTTGAA TTAACCGGTA TTAACAATCA AACCGGAGAA
    ATGAAGAATC GGTTTTTACG CTTATGGTTG ATCTTGTTTC TTCCTCAGTT
    TTGTTCCACA AACAAGAATA AGATCGCTTT ATCTGACAAT AACAAGATGA
    GACATTACTT TTG
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 792393 [Map]; Strand: w
      • AT2G02790.1 - [+] show detail - IQ-domain 29
        Distance: 1447; Region: intergenic
      • AT2G02800.2 - [+] show detail - protein kinase 2B
        Distance: 3122; Region: intergenic
    Flanking Genome Sequence: GT15925 - 5-prime edge
    TACTTTCTTT GCCTCAGAAG AATATGAAGA TTTACTTTTA AAATGTTTTC 
    TGTAAGAGAT GGTTTCAAAT CAATTTGCAG TTTGTACTGT TGGATTTTGC
    ATTTTAGTTT TAGCACTGAA CAAACCAAAT TTTATAAAAG TGATCCGTTA
    GACATAGCAG CATACAAGCA TGACCAGGAC CTAGTTTCTA TTTAATGACC
    ATTCAGCGTA TAAATAATTG AGTAAAAACC ATGAGAAAGA CGGTATACCA
    AAACAGAGAG CAAAGATAAG AGAAATTGAA TAGAGGAAGA GAGTGAGTAA
    AACAACGCCG CACATATGAG AAATACTCAT GGCACCGCCT TCGTAAGGAC
    TTTCGGGAAT CTTCTTGAAC ATGTAAACCC ATATAGCCAC ACCAGCAATG
    GTTGTTACGC CGTAGAGAGT AACGAAAAAT TCGATCATGT GGTCTTTTTT
    TGCAACTAAG GGAAGCTTGT AATGTCTTAT ATACAAGAAA GCTGCAATAT
    TTAATACTAT CAAGACCACG

AT2G02790.1

Model type
Protein coding
Short Description
IQ-domain 29
Computational Description
IQ-domain 29 (IQD29); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 28 (TAIR:AT1G14380.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02800.2

Model type
Protein coding
Short Description
protein kinase 2B
Curator Summary
Encodes protein kinase APK2b.
Computational Description
protein kinase 2B (APK2B); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 2A (TAIR:AT1G14370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03850.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03740.1); Has 577 Blast hits to 318 proteins in 93 species: Archae - 1; Bacteria - 101; Metazoa - 17; Fungi - 21; Plants - 408; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR