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GT15875

CSHL Arabidopsis genetrap mutant lines

Original: GT15875

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15875

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19051 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT15875 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAAACATA AGTGTGTGGA 
    GTAGAATCAT CGTATGAGGT CCATTTCTTT AGATGCATTC ACTTCACTTT 
    GGTCCACCAC CCTTTTTCAT ATTATCCCCT CTATTTTCAT GTATACCTAG 
    CTAGCATCTA TTTTTTTACT ATACGTACGC ATATGACTTT TATTTAGCCA 
    CGTACACTAG TTTATGTAAA ACGACTTGCG TACCTTGCTG GAATTGGGAA 
    CCAGTTTTTG CAAAGTCTTC ATCCTTTGAT TGATTTTATC TCTCCTCTTC 
    TGTAATAAAA TCAACCAAGG ATAAAACCCA GGGGGTCATG CATGTGTAAC 
    AGTAGACGAA TAACATGAAA CTTTTTTTGA AAAATAAAAT AATGGTTGAG 
    TGAATCATTA CACGTTCGGA TTGGTTATGA ATAGCAGCAG CTCTGCTTCT 
    CTTGGTTGAA ACTGATGATT TTCCTCCGGC

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR