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GT15873

CSHL Arabidopsis genetrap mutant lines

Original: GT15873

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15873

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3627395 [Map]; Strand: c
      • AT1G10880.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -313; Region: promoter
      • AT1G10890.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -331; Region: promoter
    Flanking Genome Sequence: GT15873 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTT 
    TAGTGAAACG TGATTTAGTC AAGTGAAAAA GAAGAGAAGA AGAGCATGGA 
    ATTTGCGGCT ATGTAAAATT ATGGGTATGC TAAAAAGGTT AAAATGTTAA 
    CTGTTTTTTC TTTAACCTTA ACAAAACTTA AAAACTTGGA AGGGCTCAAA 
    ACCCATGTCG AATTTAATAA GCCCAAAAGG CTTCAATGTT TAATAAGCCC 
    AAAAGGCTTT CAATGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3627337 [Map]; Strand: c
      • AT1G10880.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -255; Region: promoter
      • AT1G10890.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -389; Region: promoter
    Flanking Genome Sequence: GT15873 - 5-prime edge 
    CTTTATCCCT GCACTAAACC CACAATTCCC ATGCACATTT CATCTCACTC 
    GACGAACGTC CATCATGTAT ACACATCACA ATTCACACAT CATGCCTAGG 
    TTTACTAATC CTGAGTATAT GGATCAATTA CATGATCCTA TTTTTCTATT 
    AATTATTATA AGTATATATT AAAGAATCAA CATAATTGAT TGTGAACTTT 
    CGATTCCTTT ATAGGCTTAT TTTGTGGCCA AAACGGTAAT CTCATTCTAC 
    AATATACTTT AGCACCACTT TGGAGACGCG TTCTTAATAT GCACTATAAA 
    TGCATACACT TATTCACACA CAAAATAGGA CTTCAACGAC GCAAGCCAAA 
    GAACGTAGAC TAAAATCAAT AGACACAAGA AAGGAAAATG AAGAAGCAAA 
    AGATTACAAC CTTTGTTAAA GAACTCAACT TACGGATGAA TTCGAAGAAA 
    GAACCGATAA GTCTCCGATA CATTCACATC CTTGGCACCG TTGTCTTC

AT1G10880.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator Summary
Putative role in response to salt stress. Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green, 2009, personal communication).
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G16170.1); Has 696 Blast hits to 692 proteins in 56 species: Archae - 2; Bacteria - 7; Metazoa - 8; Fungi - 7; Plants - 576; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10890.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink).
Link
InterPro Scan - TAIR