Home
Mutant Lines
GT15860

GT15860

CSHL Arabidopsis genetrap mutant lines

Original: GT15860

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15860

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 2855545 [Map]; Strand: c
  - AT1G08900.1 - [+] show detail - Major facilitator superfamily protein
    Distance: 0; Region: exon18 (CDS)
  - AT1G08900.2 - [+] show detail - Major facilitator superfamily protein
    Distance: 0; Region: exon18 (CDS)
  - AT1G08900.3 - [+] show detail - Major facilitator superfamily protein
    Distance: 0; Region: exon18 (CDS)
  - AT1G08910.1 - [+] show detail - zinc ion binding;zinc ion binding
    Distance: -682; Region: promoter
Flanking Genome Sequence: GT15860 - 3-prime edge
```
CCGCCGACCG TTACCGACCG TTTCCTCCCT AACGATCGTA TTCATATGGA 
CATTGGTGCC TGAGACGAAA GGCCGAACAC TCGAAGAGAT TCAAACATCA 
TTAGTCCGAC TTTCATAAAA TCTAAGT
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 1014339 [Map]; Strand: w
- AT4G02300.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
  Distance: -1305; Region: intergenic
- AT4G02310.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
  Distance: 341; Region: intergenic

CTGGTTATGA GAACCATTTA AAGAAATTTT TTAAATTGAT TCGAATTATG 
TCTTTTAAAT AAAGTATTAT AAAAAATAAT AAAATAATAT TTAATTTTAC 
GAAATTGGAT TATATGATGA AATGGGTTTG AGTCGATATT AAAACGAAAC 
AGTATACTAC TGGTGAAATC TTATAGTGAA CAACTATAAT ATAATTATAC 
AATCTAAAAC ACTAAACAAC ACAAATAATC TATATAACTT CAAATTTAAA 
ATTTTAGTTA TAAAAAATGA TCTTTGATGT ACCATGATAT AAAATCTAGA 
TGGCAACAAA AATCAAAATA TAAAAAAGAG AATTTATGAA ATTTATACTA 
CGGGAACACT GGAACCTCTA AATATAATTT AGAGGTTAAG AAAAAAA

AT1G08900.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437; Bacteria - 7818; Metazoa - 5011; Fungi - 6239; Plants - 2470; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G08900.2

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437; Bacteria - 7818; Metazoa - 5011; Fungi - 6239; Plants - 2470; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G08900.3

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 22743 Blast hits to 22256 proteins in 1748 species: Archae - 444; Bacteria - 7522; Metazoa - 5012; Fungi - 6093; Plants - 2466; Viruses - 0; Other Eukaryotes - 1206 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G08910.1

Model type: Protein coding
Short Description: zinc ion binding;zinc ion binding
Computational Description: embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1002 Blast hits to 979 proteins in 199 species: Archae - 0; Bacteria - 25; Metazoa - 593; Fungi - 182; Plants - 101; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02300.1

Model type: Protein coding
Short Description: Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description: Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower, cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02320.1); Has 2686 Blast hits to 2624 proteins in 317 species: Archae - 6; Bacteria - 574; Metazoa - 1; Fungi - 202; Plants - 1878; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02310.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G44630.1); Has 627 Blast hits to 612 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR