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GT15827

CSHL Arabidopsis genetrap mutant lines

Original: GT15827

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15827

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269206 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15827 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTGAAA ACGCAGCTAA 
    TTCGTCTATG GATTTCAAAA ATTGAGGCTG CTTAGATTGA CCGATCGTAA
    TGTCCATACT TGTAGACTCT GTTTCGACAA TCTTCGGTAA TTCTCTTCAT
    CTCACTCGAC A
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269267 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15827 - 5-prime edge
    TTTCCATCCT ACTTTCTCCC TGTTTTCAGT TGCAGTGGAA ACATTCACAC 
    GCCAATTCGA TGATATTCAG AAGCACAT

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR