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GT15513

CSHL Arabidopsis genetrap mutant lines

Original: GT15513

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15513

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19639207 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -529; Region: promoter
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT15513 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCTGG 
    ATGCATACAA TCCTTCCCAA CAAAATATGC TGCTTGTATT TATTCACATC 
    TCTCTCTCAA GTATCCTATT TTCCCATAAC TCTTTTACTC GCTTCAGGTC 
    GTTGGAAATC ATGTCCATGC TTTAACATCA TTCCTGCGAC TTGATTAACC 
    TTATGCTCCT GTCCATGCGT TGCTGCGTAT ACTCTAAGCA GAATACAAAG 
    CGTCTTCTTG GACCGGCTTA TTTTAAAGCT TTCCATTTCA GAGAGGACGT 
    TTTCCATCTC TTTAAAACGC TTTTGAGATC CATACATGAT CATTAAGCCA 
    TGGAACATAG ACCTGCTCAT TTTCCATCCA GCAGAGTTTG CACGCTGCAC 
    GAATTTGGCA AGCTTATCAA CCGCATTGCA CCTGAAGTAA CTAGCCACTA 
    TTGATCTCAT AATACCATCT GTCTCTATCT GGAGTCCTTT TGTAATAGCC 
    TGGTCTATGA AATTCTCCAT GGCATGTAGA TTATCATCCT TAGCATAGAC 
    CTGCATCAAG AGCAAATACA ACCAAGGCTT GTAACTTTTC TTGGGGATAA 
    GTTTGGATAA AGTCTTGATT TTTCTGATCC TATCCTTGTG ACAACTCCTG 
    TAGTATGCGC AAATCATGGA CTCGATTAAC TTAATCTCAT TCCTGTCAAC 
    GTGACGCTTG ACGGCTTGAT ACATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19639141 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -463; Region: promoter
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT15513 - 5-prime edge 
    TACTTTCTGC AGGGATTCGA TTTGAACCCT ATAGCATCAA GGAATCAAAC 
    CATTGAAGCA GAAATGTCTC CGTTGGCGTA TAGCATCCAT GTGTCTTTGA 
    TTGTAACATT GTAAGTTGCT CTTTTGCGCA TTACTTCTGG ATATACATGA 
    TGAATAGTTT CGTACTCTGT GGTTCTTTCA GTATACAAAA CTTCTTCCTT 
    ACTTGATCAT TCTCCAATTT GCCTGATATA AATCAATCCA CATGCATTAT 
    GTGTTAAGCA CAAGATTGAT GAATCACCTT TCCTTGTGGA TGAATCGAGG 
    AATTCGGTTT TTCTTTTCAG AGAAATAAGG ATTGAGAAAC TAAAAAAATC 
    AGAAGAAGAA AGGAAAGGAG AGAAGAGATA AATTCGTTTA GTTTGTCCAA 
    GTTAAATACG AAGGTTAAGT AAGGGCTTCA GATGCCAACA AATTGGTAGG 
    CCCAATAACA TAATAAACGA GGCCCAAAAA CTTCATTTGG ATACTTACTT 
    ATCAAATGTC TTCTTCGCCA TTCTCTGCTT AAACCCTAAA CCAGCC

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR