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GT15431

CSHL Arabidopsis genetrap mutant lines

Original: GT15431

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15431

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 198842 [Map]; Strand: c
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 263; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -3574; Region: intergenic
    Flanking Genome Sequence: GT15431 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCAC TTTATGTCGT 
    ACTTAGTGAA TAACATTTTC TTTGATGGGA TATGGTTATG TGGACACAAT 
    GGATAGTACA CCTGATAAAG ATGGATTTTA AGAAATTAAC AAACTGAATG 
    AATTATATAC AAACTAATAA ATAATAAAGG TTTTATTCTT TTTAATATAA 
    ATATACATAT TTTAATAGTT AGTAAAACTA TTTCATTTTT GTTTTTGTAA 
    AAATTATGTA TAACACTATA TATAATATGT ATAATGCAAC AATCAACATG 
    TCACTTATAT GTTCTTGTTT TAGTATATTA TCCTTTGGTT ACATTATTAT 
    GTGATATACA AGCTTATTCT ATATGCGTTT ATAAATGCTT CTTGGGGGAT 
    AATTGTACCA TTTAGTGAGT TAATCTCCGA TCTAATATAA CGAATTGAAC 
    GATAAAAATA ATAACTATTA TCCTTTAAAT TATAGTCGTT GCTATTTAAT 
    TTTTATTACC TTCATTTTCT CTTCACCCCA CGATCTTTGA TTTGAATAAT 
    AAAAAGCGAA TGAAAGTAAT AGATAATATT AAATAATAAC GGTAATTTAA 
    ATACAAAACG ACGATTTTTT ATTTTATTTT AACATGATTT TTAATACTAA 
    TGAAAAAAAA ACATGAATCT AAAATACTTT CAACTAAAAA AATAAAATAA 
    GATATTTACT TTGTGCTTAT GCCTAATTTG AAATTGGGTT TCTCTAACAT 
    TTACTTTGTG GTCTTG

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR