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GT15327

CSHL Arabidopsis genetrap mutant lines

Original: GT15327

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15327

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 73652 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron4 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15327 - 5-prime edge 
    CCTACTTTCT CCCTGGCCCC AGAGAAGCGA CAAAGAGTAC CATCTGCATA 
    CAACCGATTC ATCAAGTAAT AAGTTTATTC CTTTGCTTAA AATGGCATAA 
    TTAAATTTCC CTAATTAACC ATTTTACTCA TATAATTAAG GGTCGATAGA 
    TGTGACAGAT TTGATTTCAT TATATGATTA TAAAAATAAA AATGTTGACA 
    GAGAGGAGAT CCAACGTATA AAGGCAGGCA ACCCTGATAT CAGCCACAGA 
    GAAGCCTTCA GTGCTGCTGC CAAAAACGTA CCATTTTCTT TTTATTTCTC 
    TCTTTTAAAA TAATACTACT AGTTTTCTAT ATTGCATTAT ATCCATAATC 
    ATACTATCTC ATTTTAGCCG TTATCTATAT GAATTGAACA ATATACAAAT 
    CAATTGACTG AACCTAGCTA GATTATTGTG GAGCTACATT GATTCTCACG 
    TTGCTTTAAA AAAAAACATA AAACAAAATA GTTACCCTAA TAATCCATAT 
    GCTATGATCT TTATATCCAG CATACATTAG CTAGGACTAG TCTCATGAGA 
    CTACGATCTA GGGTTTCAGT GAAGTTCCCA AGGAGACATT TTAGTCTGGC 
    TTTGTATTCG TATATTTTTG ACCAGGTTTT TATGTTATGT ATAAGATAAA 
    TACACATTAA TGTTAAAAGA GCTAAGTATA TGATGTATGT ATGAAACAGT 
    GGGCTCATTT CCCT

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR