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GT15255

CSHL Arabidopsis genetrap mutant lines

Original: GT15255

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15255

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18834683 [Map]; Strand: w
      • AT5G46440.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
      • AT5G46450.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -935; Region: promoter
    Flanking Genome Sequence: GT15255 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACGAAAT GGAGTGTGTC 
    TCTCTCAGCT ATCCTAACTT AGTTACACTT GGCAGTATCG ATAAAAGTTT 
    TGAACTCAAG TTAAATTTCG ATGGTCTGAA AATTTAGGTA TAAATTGAGG 
    AATAAATTAT GGTCTGAGAC TGTGTCTGAT TCTGAATTAA TATCATAAAA 
    ACGAGAACCC AAGTTGTAAT ATCATTCAGC CACTCTCCAA AACGCAAAAA 
    AAAAAAAAAA AAAAAAATTT TCGAAATTTT TCCCCCCAAA AAAAAAAAAC 
    CCCCCGAAAA AATTTTTTGG GGGTTTTCCC CCCTTTTGGG GGAAACCCAC 
    CCAAAAAGTG TTGGGAAAAA AAACCCCCTT AAAAAAAAAC CCCCCCCCCA 
    AAGGGGTTTT TTCTTTTTTG GGAAAAATTT GGGGAAACCC CCCCCCAAAA 
    AACCCTTGGA AAAAACCCCA AAAAAAACCC CCCGGGGGAA TTTTTTTTAA 
    AAAAAACAAA AACACCCGGG GGGGGGAAAC CCCCCGGGGG CCAAAAATTC 
    CCCCCGGGGG GCCAAAAAAA ACCCCCCCCC CCAAAGGGGG GGAAAAAAAA 
    ATTTTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9238039 [Map]; Strand: w
      • AT5G26320.1 - [+] show detail - TRAF-like family protein
        Distance: -271; Region: promoter
    Flanking Genome Sequence: GT15255 - 5-prime edge 
    CCTACTTTCT CCCTGGACAG AGGCACAATA TAGTCCTTCA GATTGTCGAC 
    TTTACGTGTA TTGTAACCAC ACCTGATACC ACCCTTTACA TAATGTAAGA 
    GGTTTGACTT AAACATTTTA ACAATATTTT GAACATTATG CTGCTCACGT 
    CTAATCTGAT ACTTGACACA TTCCAAGTCG ACCAAAAGTA ATAATAATGA 
    ATGTGTAGAA ATATACATAT TTTTCCACCA TATGGATCCA CTTTCAGTAT 
    TATATAGTAG TAACGAAACT CATTAAATAA GTAACTCTGT TTCTATATAT 
    ATGTAATGCA TTTCCCAAAA AATTGAAAAA CCATATGAGA AAATGGATTA 
    TCAGAAATGG AGTCTAGGTT TC

AT5G26320.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46440.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46450.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR