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GT15170

CSHL Arabidopsis genetrap mutant lines

Original: GT15170

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15170

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2352301 [Map]; Strand: w
      • AT1G07630.1 - [+] show detail - pol-like 5
        Distance: 609; Region: intergenic
      • AT1G07640.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 2053; Region: intergenic
    Flanking Genome Sequence: GT15170 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTC 
    TCAATGACCA ATCTGAAGCT AAGTAGTTCT GCATCTCACG CCAAACCACG 
    GTTTACGCCT TGCAGAGCCA ATCTTGAAAA TTGTACATAC ATTTAACTCT 
    AAGGATCCAC TTGTATGATG TATCTATGCA GAATGTACAA TAGACAAACG 
    CTAATTAAGC GGTTGGATAT AGACGGACGT TAATTGATTG ATGATGTTGA 
    CCCAACGCCA CTAAAATGGA CTTGTTTCTT CACAACAAAA CAATAGTAGT 
    TATTAAAATA CGTTGTGGAA GTAGTCAGAA TCTAGACAGT CAAAATAAGC 
    CAACCAAAAA CGGTAGAAAC TAAAAATGGA CAGCTAACAA AGGTAAGAAA 
    CAAGTTAAGT CAACATTGTG AAAAGCAAGT GTAACATAAA GACAAGAAGT 
    TACATAAAAC ATAAAGATCC AAATTTAATA AAAACCAAGT TCCCTGAAAT 
    GGAAGGAACC AGTACAGAAA AACAAAGAGA GGCCAACAGA ATTTGGTGAA 
    ACAAAAAAAA AAAACCCGGG GGGGGGGGGG GGGTTTTTTA TGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2352358 [Map]; Strand: w
      • AT1G07630.1 - [+] show detail - pol-like 5
        Distance: 666; Region: intergenic
      • AT1G07640.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 1996; Region: intergenic
    Flanking Genome Sequence: GT15170 - 5-prime edge 
    TTCCATCCTA CTTTCTCCGG GTCTTGTGCC CGTTTATGAA CATGATAGTA 
    TGATTGTATC GCTGTTCCTT TATATGTGAA TCCATCTTCT GCAATCTGCG 
    GATCATGCAT TATCTCCCGC AAAGAGAAAA TCCCGGTTTT GTATTACAGA 
    ACATAAAGCC AAATCCAATA GACTTTGGTA TAAGCCAATT ACTTCAATTA 
    ATAACTGGAG TGCATTGATC ATTTAGAACG AAGAGAAAAA GAAAACTCTA 
    TACTATAATA TGTAAACAGA AAAGAAAAAC GCAAATGCTA AGAAAGATTG 
    ATGAAGCGCC TAATCATCTA GATGAGACAC TCTAGTGCTT TATTACTTGA 
    GAGTATTGAT GTCCATGCAT CAATTTACCG TATGGATGGG GCACAAGTAG 
    ACAGATGGCA CAGCTCGTTC TTCTGGAACA TGCAAGCTCC TATTCCCTCA

AT1G07630.1

Model type
Protein coding
Short Description
pol-like 5
Curator Summary
Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.
Computational Description
pol-like 5 (PLL5); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 4 (TAIR:AT2G28890.1); Has 2889 Blast hits to 2855 proteins in 251 species: Archae - 0; Bacteria - 18; Metazoa - 486; Fungi - 220; Plants - 1762; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07640.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.
Computational Description
OBP2; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2); Has 1592 Blast hits to 1530 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 15; Plants - 1085; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).
Link
InterPro Scan - TAIR