1. Home
  2. Mutant Lines
  3. GT15077

GT15077

CSHL Arabidopsis genetrap mutant lines

Original: GT15077

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15077

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051859 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15077 - 3-prime edge 
    ATGAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CTGTCACTTA CACCGAGCAC GCTAGGAGGA AGACTGTGAC CGCCATGGAT 
    GTTGTCTACG CTCTCAAGAG GCAAGGAAGG ACTCTTTACG GATTCGGCGG 
    TTAATCAGGG TTTTTTAGAT CCGCGTTTGT GTTTTCTGGG TTTCTCACTT 
    AAGCGTCTGC GTTTTACTTT TGTATTGGGT TTGGCGTTTA GTAGTTTGCG 
    GTAGTGTTCT TGTTATGTGT AATTACGCTT TTTCTTCTTG CTTCAGCAGT 
    TTCGGTTGAA ATATAATCGA ATCAAGTTTC AATTTATCAA CGTCGTTTTG 
    TATTTTGGTA TTAAATTGGT GAAAATTTCT TCAATTTTGC ATCTAAATAG 
    AAGAGACAAC ATGAAATTGG ACTTTTGAGC TCAAATCTTC GAACATTTAT 
    TTCCTGATTT CACGATGGAT GAGGATAACG AAAGGGCGGT TCCTATGACC 
    GAGAGACTTT TCGGAGAAGA CAATGAGCAA AGCTACTGAA ACGAGGACAC 
    GACGTCGCAT TGGTACGGAT ATGAGTTAAA CCGACTCAAT TCCTTTATTA 
    AGACAAACCG ATTTTGGTTA AAGTGTAACA GTGAGCTGAT ATAAAACCGA 
    AACAAACCGG TACAAGTTTG ATTGAGCAAC TTGATGACAA ACTTCAGAAT 
    TTTGGTTATT GAATGAAAAT CATAGTCTAA TCGTAAAAAA TGTACAGAAG 
    AAAAGCTAGA GCAGAACAAA GATTCTATAT TCTGGTTCCA ATTATCATCG 
    CTTTAACGTC C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051863 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15077 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTGT 
    CACTTACACC GAGCACGCTA GGAGGAAGAC TGTGACCGCC ATGGATGTTG 
    TCTACGCTCT CAAGAGGCAA GGAAGGACTC TTTACGGATT CGGCGGTTAA 
    TCAGGGTTTT TTAGATCCGC GTTTGTGTTT TCTGGGTTTC TCACTTAAGC 
    GTCTGCGTTT TACTTTTGTA TTGGGTTTGG CGTTTAGTAG TTTGCGGTAG 
    TGTTCTTGTT ATGTGTAATT ACGCTTTTTC TTCTTGCTTC AGCAGTTTCG 
    GTTGAAATAT AATCGAATCA AGTTTCAATT TATCAACGTC GTTTTGTATT 
    TTGGTATTAA ATTGGTGAAA ATTTCTTCAA TTTTGCATCT AAATAGAAGA 
    GACAACATGA AATTGGACTT TTGAGCTCAA ATCTTCGAAC ATTTATTTCC 
    TGATTTCACG ATGGATGAGG ATAACGAAAG GGCGGTTCCT ATGACCGAGA 
    GACTTTTCGG AGAAGACAAT GAGCAAAGCT ACTGAAACGA GGACACGACG 
    TCGCATTGGT ACGGATATGA GTTAAACCGA CTCAATTCCT TTATTAAGAC 
    AAACCGATTT TGGTTAAAGT GTAACAGTGA GCTGATATAA AACCGAAACA 
    AACCGGTACA AGTTTGATTG AGCAACTTGA TGACAAACTT CAGAATTTTG 
    GTTATTGAAT GAAAATCATA GTCTAATCGT AAAAAATGTA CAGAAGAAAA 
    GCTAGAGCAG AACAAGATTC TATATTCTGG TTCCATTATC ATCGCTTTAC 
    GTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051809 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15077 - 5-prime edge 
    TCCTACTTTC TCCCTGAGTG ACAGCATCAC GAATCACGTT CTCGAGAAAA 
    TCTTGAGAAC GCCACGAGTC TCTTCGTAGA TGAGACCACT AATACGCTTG 
    ACTCCACCTC TACGAGCCAA TCTCCGAATC GCCGGCTTGG TGATTCCTTG 
    GATGTTGTCT CTCAGAACCT TCCTGTGACG CTTGGCTCCT CCTTTACCCA 
    AACCTTTTCC TCCCTTTCCA CGACCCGACA TTTTTTCAGC GAAGATTTAG 
    TTTATCTCGA GAGAAATTGA TGTCTGTAGA AGAAGAAGAA CGGTTAAGAG 
    TAGATTTGGG TGAGAAAGAT GTGAAATTGT TTTTATAGGC AAAGACGGAG 
    AGTCTATTTT TCGAGCAATC AGATCGCATA ATAAATCTAA CGGCTGAGAT 
    ATCGATCCGT GTGTACAATA AAATGATGTA TAAACCGTCG ATCTGTTTTA 
    ATCGACGGTT CATATTAGTG ATCCGCGTGA TGGCAGTGAT AGCCACTAAG 
    AATCGTCTTT TGTTTTACAT GTGGCGCCAC AAATTAGGGT AATGAAGCGG 
    CAATATTTTG GAACTCGGAA AATAAAATTG CGCCATCACA TTATTTGAAA 
    ATTTTCACAT GCTTTTATTT TAAAAACCCA CGAATTACAA GTTACAACCG 
    AAAAAGATTT ATAACATAGT GATTTATACT AATTTTGTAG TAGCTTAATG 
    TATATTGATA CTGGAAAAAC AATGACAATC ATATGTTAGT ATTATCAAGT 
    TATCGTATTG ATATTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051756 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15077 - 5-prime edge 
    TTGAGAACGC CACGAGTCTC TTCGTAGATG AGACCACTAA TACGCTTGAC 
    TCCACCTCTA CGAGGCAATC TCCGAATCGC CGGCTTGGTG ATTCCTTGGA 
    TGTTGTCTCT CAGAACCTTC CTGTGACGCT TGGCTCCTCC TTTACCCAAA 
    CCTTTTCCTC CCTTTCCACG ACCCGACATT TTTTCAGCGA AGATTTAGTT 
    TATCTCGAGA GAAATTGATG TCTGTCGAAG AAGAAGAACG GTTAAGAGTA 
    GATTTGGGTG AGAAAGATGT GAAATTGTTT TTATAGGCAA AGACGGAGAG 
    TCTATTTTTC GAGCAATCAG ATCGCATAAT AAATCTAACG GCTGAGATAT 
    CGATCCGGTG TGTACAATAA AATGATGTAT AAACCGTCGA TCTGTTTTAA 
    TCGACGGTTC ATATTAGTGA TCCGCGTGAT GGCAGTGATA GCCACTAAGA 
    ATCGTCTTTT GTTTTACATG TGGCG

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR