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GT15012

CSHL Arabidopsis genetrap mutant lines

Original: GT15012

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15012

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14421985 [Map]; Strand: w
      • AT2G34150.1 - [+] show detail - SCAR family protein
        Distance: 0; Region: exon5 (CDS)
      • AT2G34150.2 - [+] show detail - SCAR family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT15012 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTGTAT GGATGATGCA 
    GAAGAAAAAA TCTATACAAC GCGGTCGAGA TATATCAAGA CTTGCCTCTG 
    TGGCTAACCA GAGTGACAGG TAATGACATT TGGATTTGAC ATTGTAGAGA 
    TGTTTTCAAA TATGACTCAA AACATGAATA TATGATATGA TGTTCAGGAA 
    GACATGTACT TCTTTAAGCT TCAGTGGACG AACCTCTACC TCTAAAACTG 
    CTTCAACGAT TGAAATTGAG TCGAAATCCG ACTTGCAAGA GCATCGTTCT 
    TTCTCTTTCG ATTCAAGAAG TGGTGGAGAG AAACCGAAGA GGGTATCTTC 
    TTCTTCAAGG TTTACACCGG GTTCTCGCAC CATTGCTTCA GTTCTTTCTG 
    AAAGTGAAAG TGAAAGTGAT AGTCCTTCTC AAGATTTAAC AGCTCGTGGT 
    TCTTCTAGTG TTAGTTGGCA CGAGAAAGCT GAGATAGTGG AATGCAATGT 
    TCTGCAGTGT GCAACAGATG AAGCTCCTGA AGTAATGGAA ACTAACTTTG 
    TCTTGGATGC TGAACCGGTA TCAAGACTTA AAGAACATTC AGCGGTTGAA 
    GCGGTCCAAG ATATCAAACC GAAGGAACTG GAAATGGACA ATGAGGATGA 
    GACTGAAAGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30143482 [Map]; Strand: w
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -836; Region: promoter
    Flanking Genome Sequence: GT15012 - 5-prime edge 
    CCTACTTTCT CCGTTTACCC AAAACGTACG GTGTGGGATC GTGCTTTGAT 
    GACTTGCGAA AAGGTCTTCG TTACTGGAAT TTGGAACTTT ATGCTTAGTA 
    GGCCCATATC CTTATTTTTC TATTCCGGCT GCTCTTTGTA GGCCCATAAC 
    AATTCAGGCC CACAATTAGT ACGCATGTGG ATCCGTGTGC CATTCGACAT 
    GCATGATACA TATAGATGAG ATGACAAACA CATCATCAAC TTTTTTTCCT 
    TTCTTAATAC ACACCAATAC ACCATGACTA TCAATGAACA CATGCCAAGC 
    CACGAGTAAA TGTTTACCTG ATTACATAAC GAAAGATTGT ATAATTCCCG 
    ACAATATCCA ATGAACCACC ATCATGATGC CATCATTCAT GGGTCAGATC 
    ATGAACATCC ATGAGAAGCA AGACACTAGA TAAATAATGT ATATATAGAT 
    ACTATTCTTA AGGTTCAAAT ACTCTATCTC TACATCTACA TATCCACTTT 
    ACCGGGATAG TATGGGTCAC TATCATCATC ATCATCATGA GCACCACGAA 
    TGTCAAATAA ATA

AT1G80130.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34150.1

Model type
Protein coding
Short Description
SCAR family protein
Curator Summary
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
Computational Description
SCAR family protein; BEST Arabidopsis thaliana protein match is: SCAR family protein (TAIR:AT1G29170.1); Has 2566 Blast hits to 1216 proteins in 219 species: Archae - 0; Bacteria - 1126; Metazoa - 472; Fungi - 223; Plants - 222; Viruses - 2; Other Eukaryotes - 521 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34150.2

Model type
Protein coding
Short Description
SCAR family protein
Curator Summary
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
Computational Description
SCAR family protein; BEST Arabidopsis thaliana protein match is: SCAR family protein (TAIR:AT1G29170.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR