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GT14975

CSHL Arabidopsis genetrap mutant lines

Original: GT14975

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14975

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4789576 [Map]; Strand: w
      • AT5G14810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 4; Position: 15561495 [Map]; Strand: c
    Flanking Genome Sequence: GT14975 - 3-prime edge
    ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTGCAAC 
    TGTGTACAGT TTTGCAATTG AGTCATTAAC ATGCTCATCA TATCTCACT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18021997 [Map]; Strand: c
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT14975 - 5-prime edge
    TCCTACTTTC TCCCTCTTAT AACTCTTGAG TCGAAAAAGG TTCAACATTA 
    TGACTCCTCT CACTCTATAT TTTACCTGAC AAGATCCGTT CCTCTGGTCC
    TAACCATAGT GTCTAGCCAC TGCTCGTCCA TGCTGACCCG TATAGGCTTC
    TCTGGATCAT CACTCAAGCA ATCCTTTGAA GGATCTTTGC AGTTTGCAGC
    GTGGATTGCT ATCAAGTCTC TATATCCTAC AGCTTCACTC TCCATATCTT
    TATATTCTTC AAGAATCTTG TTCGCTACTC TGTTCCACGA AGTCTCTTTA
    ACCGTTGGAG TTCTTGTGGT GTGTACAGTT TTGCTCTCAA GATACTCCTT
    TGGAGGCTTC GTAGAGATCA GGATCTTCCC CTTAAGTTCT TCTGGTGATG
    GAAAATGCTT AAAACTCTCT GAGACACGAC GAAACAGCAT CCCTCTGTAT
    GTTTTAGTTA ACATCTACAA ACATAGAATC AATCAAATTT GTAAATCACT
    CTTTTTCAGA GAACGAAATA TATACTCTGT TTCTGCAAAA CCAACTTACC
    TTAGCAACTT GCGCTTGAAG CTTGGGTGGC AAATGATCTT CGAGAGTGAT
    GATGACTGGA TAGTCAGACA CATGAAACGC GTTATCCTTA ATGGCGGTTA
    GACATTTCTG CAAATCTTCA TGCGAAGTAA GCGTCCTGAT GAGAGAACCA
    AAACACATAT AGTGTGTGAC ATTTTTT

AT4G32212.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retrotransposon family
Link
InterPro Scan - TAIR